Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6057 122 2e-22 seq4046 89.7 1e-12 seq347 87.8 4e-12 >seq6057 Length=130802 Score = 122 bits (134), Expect = 2e-22 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || ||| || | ||| || || || ||||||| || ||| || || ||||| || || Sbjct 36451 ATTTCCTCCCCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATC 36510 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 || || || | ||| || || | ||| ||||| |||||||||| | ||| ||| || Sbjct 36511 GGACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGA---TC 36567 Query 288363 TGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 |||| |||||||| || ||||| || || || || ||||| || || ||| || | Sbjct 36568 TGGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGC 36627 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || ||||| | ||||||||||| |||||||| Sbjct 36628 CTCGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Score = 116 bits (128), Expect = 9e-21 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || || || || || |||| || ||| || || ||||| || |||| || || | | Sbjct 36692 AGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTT 36751 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || || || | || ||||| |||||||||| | ||| ||| |||||| |||||| Sbjct 36752 CCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGA---TCTGGGGGAATTCCT 36808 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || || |||||||| || || || ||||| || || || || | || || || || Sbjct 36809 TCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACCTCCAGG 36868 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 36869 GTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909 >seq4046 Length=337920 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 288380 CCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCG 288439 |||| || || || ||||| || || || || ||||| | || |||||||| ||||||| Sbjct 168659 CCTGAATCTTGGCCTTCACATTCTCGATGGAGTCGCTAGCCTCGACTTCGAGGGTGATCG 168718 Query 288440 TCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| || || ||||||||||| |||||||| Sbjct 168719 TCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 168752 >seq347 Length=1176111 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 288380 CCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCG 288439 |||||||||| |||||||| || || || ||||| | || || || || ||||| | Sbjct 1038523 CCTGGATTTTAGCTTTCACATTCTCAATGCTGTCGCTAGCCTCCACCTCAAGGGTGATGG 1038464 Query 288440 TCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 |||| |||||||| ||||| ||||||||||||||| || Sbjct 1038463 TCTTTCCGGTCAGTGTCTTCACGAATATCTGCATTTTG 1038426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179550126292522