Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 122 2e-22
seq4046 89.7 1e-12
seq347 87.8 4e-12
>seq6057
Length=130802
Score = 122 bits (134), Expect = 2e-22
Identities = 168/234 (72%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302
|| ||| || | ||| || || || ||||||| || ||| || || ||||| || ||
Sbjct 36451 ATTTCCTCCCCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATC 36510
Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362
|| || || | ||| || || | ||| ||||| |||||||||| | ||| ||| ||
Sbjct 36511 GGACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGA---TC 36567
Query 288363 TGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419
|||| |||||||| || ||||| || || || || ||||| || || ||| || |
Sbjct 36568 TGGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGC 36627
Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| || || ||||| | ||||||||||| ||||||||
Sbjct 36628 CTCGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Score = 116 bits (128), Expect = 9e-21
Identities = 159/221 (72%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315
|| || || || || |||| || ||| || || ||||| || |||| || || | |
Sbjct 36692 AGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTT 36751
Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372
|| || || | || ||||| |||||||||| | ||| ||| |||||| ||||||
Sbjct 36752 CCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGA---TCTGGGGGAATTCCT 36808
Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432
|| || |||||||| || || || ||||| || || || || | || || || ||
Sbjct 36809 TCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACCTCCAGG 36868
Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||||| ||||||||||| ||||||||
Sbjct 36869 GTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909
>seq4046
Length=337920
Score = 89.7 bits (98), Expect = 1e-12
Identities = 76/94 (81%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 288380 CCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCG 288439
|||| || || || ||||| || || || || ||||| | || |||||||| |||||||
Sbjct 168659 CCTGAATCTTGGCCTTCACATTCTCGATGGAGTCGCTAGCCTCGACTTCGAGGGTGATCG 168718
Query 288440 TCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||||| || || ||||||||||| ||||||||
Sbjct 168719 TCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 168752
>seq347
Length=1176111
Score = 87.8 bits (96), Expect = 4e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 288380 CCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCG 288439
|||||||||| |||||||| || || || ||||| | || || || || ||||| |
Sbjct 1038523 CCTGGATTTTAGCTTTCACATTCTCAATGCTGTCGCTAGCCTCCACCTCAAGGGTGATGG 1038464
Query 288440 TCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|||| |||||||| ||||| ||||||||||||||| ||
Sbjct 1038463 TCTTTCCGGTCAGTGTCTTCACGAATATCTGCATTTTG 1038426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179550126292522
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |