Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6057 86.0 6e-12 >seq6057 Length=130802 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || || || |||| || ||||| || ||||| |||||||| | | || | | Sbjct 36695 CTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCA 36754 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || || |||||||| || || | || | | |||||| || || ||||||||||| || Sbjct 36755 TCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTG 36814 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| || ||| | | |||| || || || || | || | | Sbjct 36815 TCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACCTCCAGGGTGATG 36874 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||||||| || || ||||| || ||||| Sbjct 36875 GTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || || ||||||| || ||||| || ||||| |||||||| | | || | | Sbjct 36467 CTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCA 36526 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || || || ||||| || || | || | | |||||| || || ||||||||||| || Sbjct 36527 TCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTG 36586 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| || ||| | |||||| || || || || | || | | Sbjct 36587 TCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTGATG 36646 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| || || || ||||| || ||||| Sbjct 36647 GTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499601711881560