Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4046 96.9 3e-15 >seq4046 Length=337920 Score = 96.9 bits (106), Expect = 3e-15 Identities = 479/749 (64%), Gaps = 18/749 (2%) Strand=Plus/Plus Query 93898 CCGACCCTGTTCAACGCGGGGAC-CCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGAC 93956 |||||||| || ||||| | || ||| || || ||| | || || || ||||| | || Sbjct 121414 CCGACCCTATTTAACGCCGCTACTCCCCGTCCC-CAGCTTTCATCCTGCTTCCTTCTTAC 121472 Query 93957 GAACAAGGCC---GACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC-- 94011 | |||| || || ||| || |||| ||| | | | || || ||||| | Sbjct 121473 TAT---GGCCTCGGATTCTATCGAAGGTATTTACGATACCTTGAA--ACAGTGCGCTCTA 121527 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGC-CAGGGGTTC 94070 ||||| || | || || || |||||| ||| ||| ||| | ||||| || |||| | Sbjct 121528 ATCTCCAAGTCTGCCGGAGGGATCGGGCTCAATGTTCACTGTATCCGTGCTCATGGGT-C 121586 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 ||||| ||| ||||| || ||| ||||| | | |||||||| | || || || Sbjct 121587 ATACATTGCCGGAACCAACGGTCACTCTAACGGGTTGATTCCTATGCTGAGAGTGTTTAA 121646 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 ||| | || | || || || ||||| || | ||| || | ||||| |||| Sbjct 121647 TAACACAGCCAGATATGTTGATCAGGGAGGAAATAAGAGACCTGGAGCATTCGCTATCTA 121706 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 || || |||||||| | || | | ||| | || || ||||| || || || Sbjct 121707 CCTTGAACCCTGGCATGGAGATATTTTCGAGTTCTTGGATTTGAAGAAGAATCATGGTAA 121766 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || | | || || || || || ||||||||| | ||| | || || || || ||||| Sbjct 121767 AGAGGAGAACAGAGCTAGGGATCTGTTCTACGCTATGTGGATTCCTGATCTCTTCATGAA 121826 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 | || ||| | | |||||||| | ||||| | | | || ||||| Sbjct 121827 GAGGGTAGAGGCTGATGGAGATTGGAGTCTAATGTGTCCTGACCAGTCCCCTGGACTTCA 121886 Query 94371 CGACGTTTGTGGATCGCGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || ||||| ||| || || || || |||||| || ||| | | || | Sbjct 121887 TGAGGTTTGGGGAGA-CGAGTTCGAGGCTCTGTATGAGAAATATGAAAAGGAAGGACGCG 121945 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | |||| | | | ||| | |||| ||| || || | || || | |||| Sbjct 121946 TCTTGAAGACTGTAAAAGCTCAGCAGCTCTGGTATGCTATTATTGAATCCCAAATTGAGA 122005 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAACCAGCAGCAC 94548 | || || || ||||| |||| ||||||| | ||| ||| || |||||||||||| | Sbjct 122006 CCGGAACTCCGTACATGTTGTACAAGGACGCCTGT-AACAGAAAATCCAACCAGCAGAAT 122064 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || ||||| |||| ||||||||||| || || ||||| || | | || || Sbjct 122065 CTAGGAACCATCAAATGCTCAAATCTGTGCACAGAAATCGTCGAATACTCCGCCCCTGAT 122124 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 ||| | || || || ||||| | |||||| Sbjct 122125 GAGGTGGCCGTCTGCAACCTAGCCTCCAT 122153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494680536308040