Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 96.9 3e-15
>seq4046
Length=337920
Score = 96.9 bits (106), Expect = 3e-15
Identities = 479/749 (64%), Gaps = 18/749 (2%)
Strand=Plus/Plus
Query 93898 CCGACCCTGTTCAACGCGGGGAC-CCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGAC 93956
|||||||| || ||||| | || ||| || || ||| | || || || ||||| | ||
Sbjct 121414 CCGACCCTATTTAACGCCGCTACTCCCCGTCCC-CAGCTTTCATCCTGCTTCCTTCTTAC 121472
Query 93957 GAACAAGGCC---GACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC-- 94011
| |||| || || ||| || |||| ||| | | | || || ||||| |
Sbjct 121473 TAT---GGCCTCGGATTCTATCGAAGGTATTTACGATACCTTGAA--ACAGTGCGCTCTA 121527
Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGC-CAGGGGTTC 94070
||||| || | || || || |||||| ||| ||| ||| | ||||| || |||| |
Sbjct 121528 ATCTCCAAGTCTGCCGGAGGGATCGGGCTCAATGTTCACTGTATCCGTGCTCATGGGT-C 121586
Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130
||||| ||| ||||| || ||| ||||| | | |||||||| | || || ||
Sbjct 121587 ATACATTGCCGGAACCAACGGTCACTCTAACGGGTTGATTCCTATGCTGAGAGTGTTTAA 121646
Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190
||| | || | || || || ||||| || | ||| || | ||||| ||||
Sbjct 121647 TAACACAGCCAGATATGTTGATCAGGGAGGAAATAAGAGACCTGGAGCATTCGCTATCTA 121706
Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250
|| || |||||||| | || | | ||| | || || ||||| || || ||
Sbjct 121707 CCTTGAACCCTGGCATGGAGATATTTTCGAGTTCTTGGATTTGAAGAAGAATCATGGTAA 121766
Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310
|| | | || || || || || ||||||||| | ||| | || || || || |||||
Sbjct 121767 AGAGGAGAACAGAGCTAGGGATCTGTTCTACGCTATGTGGATTCCTGATCTCTTCATGAA 121826
Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370
| || ||| | | |||||||| | ||||| | | | || |||||
Sbjct 121827 GAGGGTAGAGGCTGATGGAGATTGGAGTCTAATGTGTCCTGACCAGTCCCCTGGACTTCA 121886
Query 94371 CGACGTTTGTGGATCGCGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCAAGG 94429
|| ||||| ||| || || || || |||||| || ||| | | || |
Sbjct 121887 TGAGGTTTGGGGAGA-CGAGTTCGAGGCTCTGTATGAGAAATATGAAAAGGAAGGACGCG 121945
Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489
| |||| | | | ||| | |||| ||| || || | || || | ||||
Sbjct 121946 TCTTGAAGACTGTAAAAGCTCAGCAGCTCTGGTATGCTATTATTGAATCCCAAATTGAGA 122005
Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAACCAGCAGCAC 94548
| || || || ||||| |||| ||||||| | ||| ||| || |||||||||||| |
Sbjct 122006 CCGGAACTCCGTACATGTTGTACAAGGACGCCTGT-AACAGAAAATCCAACCAGCAGAAT 122064
Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608
|| || ||||| |||| ||||||||||| || || ||||| || | | || ||
Sbjct 122065 CTAGGAACCATCAAATGCTCAAATCTGTGCACAGAAATCGTCGAATACTCCGCCCCTGAT 122124
Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCAT 94637
||| | || || || ||||| | ||||||
Sbjct 122125 GAGGTGGCCGTCTGCAACCTAGCCTCCAT 122153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494680536308040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |