Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 134 1e-26
>seq4046
Length=337920
Score = 134 bits (148), Expect = 1e-26
Identities = 314/465 (68%), Gaps = 9/465 (2%)
Strand=Plus/Minus
Query 153302 GGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATT 153361
||| || || ||||| || || || || || ||||| || ||||| ||||||||| ||
Sbjct 122448 GGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTT 122389
Query 153362 GAGAACGGCCGCTTC-TTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCA 153420
|||| ||||| || | | ||| | || | | || || | | || || ||||
Sbjct 122388 TAGAAGTTTAGCTTCGTTAGAT-TCGAATGGGAATCTCATGAGAATGTACGCATCAGCCA 122330
Query 153421 GACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTA 153480
| ||||| ||||| | || || |||| || | |||||| || || ||| ||
Sbjct 122329 GGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTTGCTTTTCCGTGC-CTCCTTA 122271
Query 153481 T-GGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGC-GCACCACCACTTTAGTTAT 153538
|||||||| ||| |||||||||||||||||||| | ||| | || || | ||
Sbjct 122270 ACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCA-GGCAACCTTGGATAC 122212
Query 153539 CGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGC 153598
| ||| || |||||||| ||||||||| | ||| | ||| | || |||||
Sbjct 122211 CTTCTTCAGCTTCTCGAAGTCATAGGTC---TTGTCAGGGTTCACGAACATGTTGACGGC 122155
Query 153599 AATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGC 153658
||| || || || || ||||||||| ||| || | | || ||| | ||||| || |
Sbjct 122154 AATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGT 122095
Query 153659 GCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGC 153718
||| || || |||||| ||| || | ||| ||||| ||| ||| | || || ||
Sbjct 122094 GCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGC 122035
Query 153719 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC 153763
||| ||| | | ||||||||| |||||||| | ||| | |||
Sbjct 122034 GTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTC 121990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496219603571280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |