Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4046 134 1e-26 >seq4046 Length=337920 Score = 134 bits (148), Expect = 1e-26 Identities = 314/465 (68%), Gaps = 9/465 (2%) Strand=Plus/Minus Query 153302 GGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATT 153361 ||| || || ||||| || || || || || ||||| || ||||| ||||||||| || Sbjct 122448 GGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTT 122389 Query 153362 GAGAACGGCCGCTTC-TTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCA 153420 |||| ||||| || | | ||| | || | | || || | | || || |||| Sbjct 122388 TAGAAGTTTAGCTTCGTTAGAT-TCGAATGGGAATCTCATGAGAATGTACGCATCAGCCA 122330 Query 153421 GACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTA 153480 | ||||| ||||| | || || |||| || | |||||| || || ||| || Sbjct 122329 GGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTTGCTTTTCCGTGC-CTCCTTA 122271 Query 153481 T-GGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGC-GCACCACCACTTTAGTTAT 153538 |||||||| ||| |||||||||||||||||||| | ||| | || || | || Sbjct 122270 ACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCA-GGCAACCTTGGATAC 122212 Query 153539 CGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGC 153598 | ||| || |||||||| ||||||||| | ||| | ||| | || ||||| Sbjct 122211 CTTCTTCAGCTTCTCGAAGTCATAGGTC---TTGTCAGGGTTCACGAACATGTTGACGGC 122155 Query 153599 AATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGC 153658 ||| || || || || ||||||||| ||| || | | || ||| | ||||| || | Sbjct 122154 AATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGT 122095 Query 153659 GCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGC 153718 ||| || || |||||| ||| || | ||| ||||| ||| ||| | || || || Sbjct 122094 GCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGC 122035 Query 153719 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC 153763 ||| ||| | | ||||||||| |||||||| | ||| | ||| Sbjct 122034 GTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTC 121990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496219603571280