Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 113 4e-20
seq347 95.1 1e-14
>seq6057
Length=130802
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||| || || ||||||||||||||| || || | ||| || ||||| ||||||
Sbjct 36713 GTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGCTGCTTTCCA 36772
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||||| ||||||||| || || || || ||||||||| ||| || |||
Sbjct 36773 GCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTA 36832
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | | |||| || |||||| || | ||| | || || ||||||| ||
Sbjct 36833 ACGTTCTCAATGCTGTCACTAGCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTC 36892
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 36893 TTGACGAAGATCTGCAT 36909
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
|||| ||| | || || || || ||||||||||||||| || || | ||| ||
Sbjct 36473 ACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCC 36532
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
|| || ||||||||| ||||||||| ||||||||| || || || || |||||||||
Sbjct 36533 AGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGA 36592
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|| || ||| | | |||| | | || || |||||| || | ||| | |||||
Sbjct 36593 ATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTGATGGTTTTA 36652
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| | || || || || ||||||||
Sbjct 36653 CCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
|||| ||| | ||||| || || || |||||||||||| || || | ||| ||
Sbjct 36929 ACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGTTCTTCCATCCTCC 36988
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021
||||| ||||||||| ||||||||| ||||||||| ||||| || || |||||||||
Sbjct 36989 AGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCC 37045
Score = 89.7 bits (98), Expect = 5e-13
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
|||| ||| | ||||| || || ||||||||||||||| || || | ||| ||
Sbjct 42245 ACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCC 42304
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021
||||| |||||||| ||||||||| ||||||||| || || || || |||||||||
Sbjct 42305 AGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCC 42361
>seq347
Length=1176111
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | |||||||| || |||||||||||||| | || | ||| ||
Sbjct 1038898 ACCAAGTGCAAGGTAGACTCCTTCTGAATATTGTAATCTGAGAGGGTTCTTCCATCTTCC 1038839
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021
|||||||| |||||| ||||||||| ||||||||| || || || ||||||||||||
Sbjct 1038838 AGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATCCCCTCCTTGTCC 1038782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475459793999760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |