Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6057 113 4e-20 seq347 95.1 1e-14 >seq6057 Length=130802 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || ||||||||||||||| || || | ||| || ||||| |||||| Sbjct 36713 GTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGCTGCTTTCCA 36772 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||| ||||||||| || || || || ||||||||| ||| || ||| Sbjct 36773 GCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTA 36832 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | | |||| || |||||| || | ||| | || || ||||||| || Sbjct 36833 ACGTTCTCAATGCTGTCACTAGCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTC 36892 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 36893 TTGACGAAGATCTGCAT 36909 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | || || || || ||||||||||||||| || || | ||| || Sbjct 36473 ACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCC 36532 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||||||| ||||||||| ||||||||| || || || || ||||||||| Sbjct 36533 AGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGA 36592 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | |||| | | || || |||||| || | ||| | ||||| Sbjct 36593 ATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTGATGGTTTTA 36652 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| | || || || || |||||||| Sbjct 36653 CCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | ||||| || || || |||||||||||| || || | ||| || Sbjct 36929 ACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGTTCTTCCATCCTCC 36988 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 ||||| ||||||||| ||||||||| ||||||||| ||||| || || ||||||||| Sbjct 36989 AGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCC 37045 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | ||||| || || ||||||||||||||| || || | ||| || Sbjct 42245 ACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCC 42304 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 ||||| |||||||| ||||||||| ||||||||| || || || || ||||||||| Sbjct 42305 AGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCC 42361 >seq347 Length=1176111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | |||||||| || |||||||||||||| | || | ||| || Sbjct 1038898 ACCAAGTGCAAGGTAGACTCCTTCTGAATATTGTAATCTGAGAGGGTTCTTCCATCTTCC 1038839 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 |||||||| |||||| ||||||||| ||||||||| || || || |||||||||||| Sbjct 1038838 AGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATCCCCTCCTTGTCC 1038782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475459793999760