Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6057 116 9e-21 seq4046 100 7e-16 >seq6057 Length=130802 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| || || |||||||| ||||| || ||||| || | ||||| || | || ||| Sbjct 36688 TCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGT 36747 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 |||||||| |||||||||||||| |||||||| | | |||||| || || |||||| Sbjct 36748 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCC 36807 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| ||| || | | |||| | | || || |||| Sbjct 36808 TTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACCTCCAG 36867 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || || || Sbjct 36868 GGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTG 36906 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || || || || ||||| || ||||| || | ||||| || | || ||| ||| Sbjct 36464 AGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTT 36523 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| ||||| |||||||| |||||||| | | |||||| || || ||||||||| Sbjct 36524 CCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCC 36583 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| ||| ||| |||| | | || | | || || |||| ||| Sbjct 36584 TTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTG 36643 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || | || || || || || || Sbjct 36644 ATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTG 36678 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| || || || || || ||||| || ||||| |||| ||||| || | || ||| Sbjct 36916 TCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGT 36975 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 |||||||| |||||||||||||| |||||||| | | |||||| || ||| |||||| Sbjct 36976 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCC 37035 Query 199528 TTCTCGCTCCTGAA 199541 ||| ||||||| Sbjct 37036 TTCCTTGTCCTGAA 37049 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| || || || || || ||||| || ||||| || | |||||||| | || ||| Sbjct 37504 TCTAAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGACAGAGT 37563 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 |||||||| |||||||||||||| |||||||| | | |||||| || || |||||| Sbjct 37564 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCC 37623 Query 199528 TTCTCGCTCCTGAA 199541 |||| ||||||| Sbjct 37624 TTCTTTGTCCTGAA 37637 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| || || |||||||| ||||| || ||||| || | || || || | || ||| Sbjct 39005 TCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGACAGAGT 39064 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 |||||||| |||||||||||||| |||||||| | | |||||| || ||| |||||| Sbjct 39065 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCC 39124 Query 199528 TTCTCGCTCCTGAA 199541 ||| ||||||| Sbjct 39125 TTCCTTGTCCTGAA 39138 Score = 100 bits (110), Expect = 7e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| ||||||||| |||| |||||||| ||| || |||||||||| | ||||| Sbjct 36780 ATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAATATTCAGAAG 36721 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 || |||||||||||||||||| | || ||| || Sbjct 36720 GAATCTACTCTTCACCTTGTTCTCAGGCTTAGA 36688 Score = 96.9 bits (106), Expect = 8e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| ||||||||| |||| |||||||| ||| || |||||||||| ||||||| Sbjct 37008 ATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAATATCCAGAAG 36949 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 || ||||||||||| || ||| | || ||| || Sbjct 36948 GAATCTACTCTTCATCTGGTTCTCAGGCTTAGA 36916 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| ||||||||| |||| |||||||| ||| || | ||||| || | ||||| Sbjct 39097 ATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCGGATTATAATATTCAGAAG 39038 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 || |||||||||||||||||| | || ||| || Sbjct 39037 GAATCTACTCTTCACCTTGTTCTCAGGCTTAGA 39005 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| || || || || || ||||| || ||||| || | ||||| || | || ||| Sbjct 42232 TCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGT 42291 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 |||||||| |||||||||||||| || ||||| | | |||||| || || |||||| Sbjct 42292 TCTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATTCC 42351 Query 199528 TTC 199530 ||| Sbjct 42352 TTC 42354 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || ||||||||| |||| |||||||| ||| || |||||||||| | ||||| Sbjct 42324 ATCTTTGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAATATTCAGAAG 42265 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 || ||||||||||| || ||| | || ||| || Sbjct 42264 GAATCTACTCTTCATCTGGTTCTCAGGCTTAGA 42232 >seq4046 Length=337920 Score = 100 bits (110), Expect = 7e-16 Identities = 131/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 167837 TGGGCTTTTACGGTAGTTCTCG-CTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTC 167895 || |||||||| || ||| | | | |||||| ||||| ||| ||||||| || | || Sbjct 121967 TGAGCTTTTACAGTC-TTCAAGACGCGTCCTTCCTTTTCATATTTCTCATACAGAGCCTC 121909 Query 167896 GAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCA 167955 ||| || | || ||| || | ||| || || | | | ||||| | |||||||| Sbjct 121908 GAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATTAGACTCCA 121849 Query 167956 ATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAACA 168014 || |||||| | ||| ||||||||||||||||| || | | |||| || |||||||||| Sbjct 121848 ATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTAGAACA 121790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178817391067233