Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 116 9e-21
seq4046 100 7e-16
>seq6057
Length=130802
Score = 116 bits (128), Expect = 9e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|| ||| || || |||||||| ||||| || ||||| || | ||||| || | || |||
Sbjct 36688 TCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGT 36747
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|||||||| |||||||||||||| |||||||| | | |||||| || || ||||||
Sbjct 36748 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCC 36807
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| ||||| ||||| ||| ||| || | | |||| | | || || ||||
Sbjct 36808 TTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACCTCCAG 36867
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || | || || || || || ||
Sbjct 36868 GGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTG 36906
Score = 104 bits (114), Expect = 6e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471
|| || || || || || ||||| || ||||| || | ||||| || | || ||| |||
Sbjct 36464 AGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTT 36523
Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531
||||| ||||| |||||||| |||||||| | | |||||| || || |||||||||
Sbjct 36524 CCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCC 36583
Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591
||||||||||| ||| ||| |||| | | || | | || || |||| |||
Sbjct 36584 TTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTG 36643
Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || | || || || || || ||
Sbjct 36644 ATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTG 36678
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|| ||| || || || || || ||||| || ||||| |||| ||||| || | || |||
Sbjct 36916 TCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGT 36975
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|||||||| |||||||||||||| |||||||| | | |||||| || ||| ||||||
Sbjct 36976 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCC 37035
Query 199528 TTCTCGCTCCTGAA 199541
||| |||||||
Sbjct 37036 TTCCTTGTCCTGAA 37049
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|| ||| || || || || || ||||| || ||||| || | |||||||| | || |||
Sbjct 37504 TCTAAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGACAGAGT 37563
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|||||||| |||||||||||||| |||||||| | | |||||| || || ||||||
Sbjct 37564 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCC 37623
Query 199528 TTCTCGCTCCTGAA 199541
|||| |||||||
Sbjct 37624 TTCTTTGTCCTGAA 37637
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|| ||| || || |||||||| ||||| || ||||| || | || || || | || |||
Sbjct 39005 TCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGACAGAGT 39064
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|||||||| |||||||||||||| |||||||| | | |||||| || ||| ||||||
Sbjct 39065 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCC 39124
Query 199528 TTCTCGCTCCTGAA 199541
||| |||||||
Sbjct 39125 TTCCTTGTCCTGAA 39138
Score = 100 bits (110), Expect = 7e-16
Identities = 78/93 (84%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
|||||||| ||||||||| |||| |||||||| ||| || |||||||||| | |||||
Sbjct 36780 ATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAATATTCAGAAG 36721
Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030
|| |||||||||||||||||| | || ||| ||
Sbjct 36720 GAATCTACTCTTCACCTTGTTCTCAGGCTTAGA 36688
Score = 96.9 bits (106), Expect = 8e-15
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
|||||||| ||||||||| |||| |||||||| ||| || |||||||||| |||||||
Sbjct 37008 ATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAATATCCAGAAG 36949
Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030
|| ||||||||||| || ||| | || ||| ||
Sbjct 36948 GAATCTACTCTTCATCTGGTTCTCAGGCTTAGA 36916
Score = 91.5 bits (100), Expect = 3e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
|||||||| ||||||||| |||| |||||||| ||| || | ||||| || | |||||
Sbjct 39097 ATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCGGATTATAATATTCAGAAG 39038
Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030
|| |||||||||||||||||| | || ||| ||
Sbjct 39037 GAATCTACTCTTCACCTTGTTCTCAGGCTTAGA 39005
Score = 87.8 bits (96), Expect = 4e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|| ||| || || || || || ||||| || ||||| || | ||||| || | || |||
Sbjct 42232 TCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGT 42291
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|||||||| |||||||||||||| || ||||| | | |||||| || || ||||||
Sbjct 42292 TCTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATTCC 42351
Query 199528 TTC 199530
|||
Sbjct 42352 TTC 42354
Score = 87.8 bits (96), Expect = 4e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
||||| || ||||||||| |||| |||||||| ||| || |||||||||| | |||||
Sbjct 42324 ATCTTTGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAATATTCAGAAG 42265
Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030
|| ||||||||||| || ||| | || ||| ||
Sbjct 42264 GAATCTACTCTTCATCTGGTTCTCAGGCTTAGA 42232
>seq4046
Length=337920
Score = 100 bits (110), Expect = 7e-16
Identities = 131/179 (73%), Gaps = 2/179 (1%)
Strand=Plus/Minus
Query 167837 TGGGCTTTTACGGTAGTTCTCG-CTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTC 167895
|| |||||||| || ||| | | | |||||| ||||| ||| ||||||| || | ||
Sbjct 121967 TGAGCTTTTACAGTC-TTCAAGACGCGTCCTTCCTTTTCATATTTCTCATACAGAGCCTC 121909
Query 167896 GAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCA 167955
||| || | || ||| || | ||| || || | | | ||||| | ||||||||
Sbjct 121908 GAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATTAGACTCCA 121849
Query 167956 ATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAACA 168014
|| |||||| | ||| ||||||||||||||||| || | | |||| || ||||||||||
Sbjct 121848 ATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTAGAACA 121790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178817391067233
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |