Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq891 149 6e-31 seq6057 89.7 5e-13 >seq891 Length=807508 Score = 149 bits (164), Expect = 6e-31 Identities = 229/325 (70%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 132816 CTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCAC 132875 ||| |||| || ||||| |||| || ||| || ||| || ||| ||| || | | Sbjct 738536 CTCAATGGAAACAGCGTCTTTGACAATCTCCAGAATACGCTCCTTGCTGGGC--TTCCTC 738479 Query 132876 --CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATG 132933 || ||| |||||| |||||| || ||||| || || |||||||||||||| ||| Sbjct 738478 TGCAGGTGCCTGAACAGCAAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGATG 738419 Query 132934 AGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCG 132993 |||||||| ||||| || | || ||||| || || || || || | ||| || |||||| Sbjct 738418 AGTTCGTTACTGAATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCG 738359 Query 132994 GCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCG 133053 |||||||| || || ||||||| || || || | || ||||| | | | ||| || Sbjct 738358 GCGAAACTACCAGAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCG 738299 Query 133054 AACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCAC 133113 || || || | ||| | ||||| || ||||| || ||||||| || ||| Sbjct 738298 AATGTAGCGTTTTTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCACGGCA 738239 Query 133114 GGCATCGTTTCGATGGCGTTCAACA 133138 || || |||||||| ||||| |||| Sbjct 738238 GGGATGGTTTCGATAGCGTTGAACA 738214 >seq6057 Length=130802 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || |||||||||||| | || |||||||| | Sbjct 36681 ATGCAGATCTTCGTCAAGACCTTAACCGGTAAAACCATCACCCTGGAGGTCGAGGCTAGT 36622 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || ||| | | |||| |||| | || || | ||||| || ||||||||| | || || Sbjct 36621 GATAGCATCGAGAACG-TTAAGGCCAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCA 36563 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| || || || ||||| || | | || || ||| ||||| Sbjct 36562 GCAGAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTACAA 36503 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || || |||||| | || || ||| |||| || Sbjct 36502 TATTCAGAAGGAATCAACTCTTCATCTGGTTCT 36470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500129666348160