Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 190 3e-43
seq891 96.9 4e-15
>seq4046
Length=337920
Score = 190 bits (210), Expect = 3e-43
Identities = 934/1466 (64%), Gaps = 48/1466 (3%)
Strand=Plus/Plus
Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCA-AAGA----CTGGATGGTGTCT 111600
||||| || | |||||||| ||| |||||||||| |||| | || ||||
Sbjct 121240 TATTTCGGGTTTAAGACCCTAGAGCGTAGCTACCTCCTGAAGATCAACAAGAAGGTGG-- 121297
Query 111601 TGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA 111660
|||| | || ||| | ||||| ||| | || || | || ||||| || || ||||
Sbjct 121298 ---TGGAGAGACCCCAGCAGATGTTGATGAGAGTTGCTGTAGGAATCCACGGAGAGGATA 121354
Query 111661 TTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACAC 111720
|||| |||| | || || ||||| | || | | |||| | ||||| | |
Sbjct 121355 TTGACTCTGCCATTGAAACCTACGATCTTCTTTCGCAGAGACTGTTTACTCACGCTTCTC 121414
Query 111721 CAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAA 111780
| ||||| || ||||| | ||| || | ||||| | || || |||||| || | |
Sbjct 121415 CGACCCTATTTAACGCCGCTACTCCCCGTCCCCAGCTTTCATCCTGCTTCCTTCTTACTA 121474
Query 111781 ACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAA 111840
|||||| ||| | || ||||||| || | | | || || | |||||| |
Sbjct 121475 TGGCCTCGGATTCTATCGAAGGTATTTACGATACCTTGAAACAGTGCGCTCTAATCTCCA 121534
Query 111841 AGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTA 111900
||| || || || |||||| | | | || | || | || | ||| |||
Sbjct 121535 AGTCTGCCGGAGGGATCGGGCTCAATGTTCACTGTATCCGTGCTCATGGGTCATACATTG 121594
Query 111901 GAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 111960
|| || || ||||| || | || | ||||| ||||| | || ||||| |||||
Sbjct 121595 CCGGAACCAACGGTCACTCTAACGGGTTGATTCCTATGCTGAGAGTGTTTAATAACACAG 121654
Query 111961 CGCGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTG 112014
| | ||||| | || | || | ||| || || |||| |||| ||||
Sbjct 121655 CCAGATATGTTGATCAGGGAGGAAAT---AAGAGACCTGGAGCATTCGCTATCTACCTTG 121711
Query 112015 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGG 112074
| || ||||| | ||||| | |||||| | || ||| || || ||| | ||||
Sbjct 121712 AACCCTGGCATGGAGATATTTTCGAGTTCTTGGATTTGAAGAAGAATCATGGTAAAGAGG 121771
Query 112075 AGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 112133
|| | | || | ||||| |||| |||| | |||||||| |||||||||||||||||
Sbjct 121772 AGAA-CAGAGCTAGGGATCTGTTCTACGCTATGTGGATTCCTGATCTCTTCATGAAGAGG 121830
Query 112134 GTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGAT 112193
|| |||| ||| ||||| ||| | ||||| ||| || | || || || || ||
Sbjct 121831 GTAGAGGCTGATGGAGATTGGAGTCTAATGTGTCCTGACCAGTCCCCTGGACT-TC--AT 121887
Query 112194 GCCGT---GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCG 112250
| || ||| || ||||| || || || || || || || | ||| | || ||
Sbjct 121888 GAGGTTTGGGGAGACGAGTTCGAGGCTCTGTATGAGAAATATGAAAAGGAAGGACG--CG 121945
Query 112251 ACTGC--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGA 112308
|| ||| || |||| | | ||| | |||||| | | || |||| ||||
Sbjct 121946 TCTTGAAGACTGTAAAAGCTCAGCAGCTCTGGTATGCTATTATTGAATCCCAAATTGAGA 122005
Query 112309 CTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATT 112368
| || || || || ||| | ||||| |||||||||||| ||| || || |||||
Sbjct 122006 CCGGAACTCCGTACATGTTGTACAAGGACGCCTGTAACAGAAAATCCAACCAGCAGAATC 122065
Query 112369 TGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATG 112428
| || ||||| | || || || || ||||||||| | |||| | | | ||||
Sbjct 122066 TAGGAACCATCAAATGCTCAAATCTGTGCACAGAAATCGTCGAATACTCCGCCCCTGATG 122125
Query 112429 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 112488
|| ||| || || ||||| || || || || || || || ||| | || || |
Sbjct 122126 AGGTGGCCGTCTGCAACCTAGCCTCCATTGCCGTCAACATGTTCGTGAACCCTGA---CA 122182
Query 112489 AGACATTTGATTATGAAAAACTCCACGAAGTTA-CGAAAACTGTCACAAAAAACCTAAAC 112547
|||| | ||| | || || || | |||| || | || || | | |||||| |||
Sbjct 122183 AGACCTATGACTTCGAGAAGCT-GAAGAAGGTATCCAAGGTTGCCTGCAGAAACCTCAAC 122241
Query 112548 AGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACAC 112607
| | |||| || |||| || |||||| || || || ||| || ||| | |||
Sbjct 122242 AAAATTATCGACGTTAATTACTATCCCGTTAAGGAGGCACGGAAAAGCAACATGCGTCAC 122301
Query 112608 CGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA 112667
| ||||||||| | ||| | || || || || |||| | |||||| | | ||
Sbjct 122302 AGACCAATTGGTATTGGTATTCAGGGCCTGGCTGATGCGTACATTCTCATGAGATTCCCA 122361
Query 112668 TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCC 112727
|| || || ||||||| || | || | || ||||| || || || |||
Sbjct 122362 TTCGAATCTAACGAAGCTAAACTTCTAAACAAACAAATCTTTGAAACTATTTACTACGGA 122421
Query 112728 GCTCTTGAGGCGAGTTCGGAGTTGGCAGAG--GTTGATGGTCCATATGAAACCTTTGAGG 112785
||||| || || || | ||| | || ||| ||| ||| | |||||||||| | |
Sbjct 122422 GCTCTGGAAGCAAGCTGTGAGCTTGCCGAGCAATTG--GGTACTTATGAAACCTATCCTG 122479
Query 112786 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-- 112843
||||||| | | || || ||| |||| ||||||||||| | || | ||| | ||
Sbjct 122480 GTTCTCCGGTTAGTCAGGGTAGGCTGCAATATGATATGTGGGGA-GTAACACCCA-CTGA 122537
Query 112844 TCACTACGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGT 112901
| | | || |||| || |||| | || ||| || | ||| | | ||| |
Sbjct 122538 GCTCCATGATTGGGCTAAGCTGAAGGCCCAGATTGCAA--AGCATGGTGTAAGGAACTCT 122595
Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961
|| | |||| || ||||||||||| ||||| || || || |||| || || || ||
Sbjct 122596 CTGCTCCTGGCTCCTATGCCAACAGCTTCCACTGCTCAGATTCTGGGCAACAACGAGAGC 122655
Query 112962 TTTGAACCCTACACGACGAACATCTA 112987
| || ||||||| | ||||||||
Sbjct 122656 GTGGAGGCCTACACCAGTAACATCTA 122681
>seq891
Length=807508
Score = 96.9 bits (106), Expect = 4e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTCGCGTTCCTTTGCTGAGCG 102184
|| || || || ||||| | |||||| || | | ||| ||| | | || || || |
Sbjct 738249 AAAAAGGCAGACTGGGCCCTCAAGTGGATTAACGCGAAAAACGC-TACATTCGCCGAAAG 738307
Query 102185 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 102244
| | |||| ||||| | |||||| || ||||||||||||||| ||| ||| ||||
Sbjct 738308 AATTATCGCTTTTGCCTCTGTTGAAGGAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTT 738367
Query 102245 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 102304
||| | |||||||||||||| ||||| || || ||| ||||| || ||||| |
Sbjct 738368 CTGGTTGAAGAAGCGAGGTCTGATGCCTGGACTTACATTCAGTAACGAACTCATCTCCAG 738427
Query 102305 TGACGAGGGACTCCACCAAGAGTTTGC 102331
||||||||| | ||| ||| || ||
Sbjct 738428 GGACGAGGGATTACACACAGACTTCGC 738454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620688868727280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |