Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4046 190 3e-43 seq891 96.9 4e-15 >seq4046 Length=337920 Score = 190 bits (210), Expect = 3e-43 Identities = 934/1466 (64%), Gaps = 48/1466 (3%) Strand=Plus/Plus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCA-AAGA----CTGGATGGTGTCT 111600 ||||| || | |||||||| ||| |||||||||| |||| | || |||| Sbjct 121240 TATTTCGGGTTTAAGACCCTAGAGCGTAGCTACCTCCTGAAGATCAACAAGAAGGTGG-- 121297 Query 111601 TGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA 111660 |||| | || ||| | ||||| ||| | || || | || ||||| || || |||| Sbjct 121298 ---TGGAGAGACCCCAGCAGATGTTGATGAGAGTTGCTGTAGGAATCCACGGAGAGGATA 121354 Query 111661 TTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACAC 111720 |||| |||| | || || ||||| | || | | |||| | ||||| | | Sbjct 121355 TTGACTCTGCCATTGAAACCTACGATCTTCTTTCGCAGAGACTGTTTACTCACGCTTCTC 121414 Query 111721 CAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAA 111780 | ||||| || ||||| | ||| || | ||||| | || || |||||| || | | Sbjct 121415 CGACCCTATTTAACGCCGCTACTCCCCGTCCCCAGCTTTCATCCTGCTTCCTTCTTACTA 121474 Query 111781 ACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAA 111840 |||||| ||| | || ||||||| || | | | || || | |||||| | Sbjct 121475 TGGCCTCGGATTCTATCGAAGGTATTTACGATACCTTGAAACAGTGCGCTCTAATCTCCA 121534 Query 111841 AGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTA 111900 ||| || || || |||||| | | | || | || | || | ||| ||| Sbjct 121535 AGTCTGCCGGAGGGATCGGGCTCAATGTTCACTGTATCCGTGCTCATGGGTCATACATTG 121594 Query 111901 GAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 111960 || || || ||||| || | || | ||||| ||||| | || ||||| ||||| Sbjct 121595 CCGGAACCAACGGTCACTCTAACGGGTTGATTCCTATGCTGAGAGTGTTTAATAACACAG 121654 Query 111961 CGCGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTG 112014 | | ||||| | || | || | ||| || || |||| |||| |||| Sbjct 121655 CCAGATATGTTGATCAGGGAGGAAAT---AAGAGACCTGGAGCATTCGCTATCTACCTTG 121711 Query 112015 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGG 112074 | || ||||| | ||||| | |||||| | || ||| || || ||| | |||| Sbjct 121712 AACCCTGGCATGGAGATATTTTCGAGTTCTTGGATTTGAAGAAGAATCATGGTAAAGAGG 121771 Query 112075 AGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 112133 || | | || | ||||| |||| |||| | |||||||| ||||||||||||||||| Sbjct 121772 AGAA-CAGAGCTAGGGATCTGTTCTACGCTATGTGGATTCCTGATCTCTTCATGAAGAGG 121830 Query 112134 GTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGAT 112193 || |||| ||| ||||| ||| | ||||| ||| || | || || || || || Sbjct 121831 GTAGAGGCTGATGGAGATTGGAGTCTAATGTGTCCTGACCAGTCCCCTGGACT-TC--AT 121887 Query 112194 GCCGT---GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCG 112250 | || ||| || ||||| || || || || || || || | ||| | || || Sbjct 121888 GAGGTTTGGGGAGACGAGTTCGAGGCTCTGTATGAGAAATATGAAAAGGAAGGACG--CG 121945 Query 112251 ACTGC--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGA 112308 || ||| || |||| | | ||| | |||||| | | || |||| |||| Sbjct 121946 TCTTGAAGACTGTAAAAGCTCAGCAGCTCTGGTATGCTATTATTGAATCCCAAATTGAGA 122005 Query 112309 CTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATT 112368 | || || || || ||| | ||||| |||||||||||| ||| || || ||||| Sbjct 122006 CCGGAACTCCGTACATGTTGTACAAGGACGCCTGTAACAGAAAATCCAACCAGCAGAATC 122065 Query 112369 TGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATG 112428 | || ||||| | || || || || ||||||||| | |||| | | | |||| Sbjct 122066 TAGGAACCATCAAATGCTCAAATCTGTGCACAGAAATCGTCGAATACTCCGCCCCTGATG 122125 Query 112429 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 112488 || ||| || || ||||| || || || || || || || ||| | || || | Sbjct 122126 AGGTGGCCGTCTGCAACCTAGCCTCCATTGCCGTCAACATGTTCGTGAACCCTGA---CA 122182 Query 112489 AGACATTTGATTATGAAAAACTCCACGAAGTTA-CGAAAACTGTCACAAAAAACCTAAAC 112547 |||| | ||| | || || || | |||| || | || || | | |||||| ||| Sbjct 122183 AGACCTATGACTTCGAGAAGCT-GAAGAAGGTATCCAAGGTTGCCTGCAGAAACCTCAAC 122241 Query 112548 AGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACAC 112607 | | |||| || |||| || |||||| || || || ||| || ||| | ||| Sbjct 122242 AAAATTATCGACGTTAATTACTATCCCGTTAAGGAGGCACGGAAAAGCAACATGCGTCAC 122301 Query 112608 CGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA 112667 | ||||||||| | ||| | || || || || |||| | |||||| | | || Sbjct 122302 AGACCAATTGGTATTGGTATTCAGGGCCTGGCTGATGCGTACATTCTCATGAGATTCCCA 122361 Query 112668 TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCC 112727 || || || ||||||| || | || | || ||||| || || || ||| Sbjct 122362 TTCGAATCTAACGAAGCTAAACTTCTAAACAAACAAATCTTTGAAACTATTTACTACGGA 122421 Query 112728 GCTCTTGAGGCGAGTTCGGAGTTGGCAGAG--GTTGATGGTCCATATGAAACCTTTGAGG 112785 ||||| || || || | ||| | || ||| ||| ||| | |||||||||| | | Sbjct 122422 GCTCTGGAAGCAAGCTGTGAGCTTGCCGAGCAATTG--GGTACTTATGAAACCTATCCTG 122479 Query 112786 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-- 112843 ||||||| | | || || ||| |||| ||||||||||| | || | ||| | || Sbjct 122480 GTTCTCCGGTTAGTCAGGGTAGGCTGCAATATGATATGTGGGGA-GTAACACCCA-CTGA 122537 Query 112844 TCACTACGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGT 112901 | | | || |||| || |||| | || ||| || | ||| | | ||| | Sbjct 122538 GCTCCATGATTGGGCTAAGCTGAAGGCCCAGATTGCAA--AGCATGGTGTAAGGAACTCT 122595 Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961 || | |||| || ||||||||||| ||||| || || || |||| || || || || Sbjct 122596 CTGCTCCTGGCTCCTATGCCAACAGCTTCCACTGCTCAGATTCTGGGCAACAACGAGAGC 122655 Query 112962 TTTGAACCCTACACGACGAACATCTA 112987 | || ||||||| | |||||||| Sbjct 122656 GTGGAGGCCTACACCAGTAACATCTA 122681 >seq891 Length=807508 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTCGCGTTCCTTTGCTGAGCG 102184 || || || || ||||| | |||||| || | | ||| ||| | | || || || | Sbjct 738249 AAAAAGGCAGACTGGGCCCTCAAGTGGATTAACGCGAAAAACGC-TACATTCGCCGAAAG 738307 Query 102185 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 102244 | | |||| ||||| | |||||| || ||||||||||||||| ||| ||| |||| Sbjct 738308 AATTATCGCTTTTGCCTCTGTTGAAGGAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTT 738367 Query 102245 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 102304 ||| | |||||||||||||| ||||| || || ||| ||||| || ||||| | Sbjct 738368 CTGGTTGAAGAAGCGAGGTCTGATGCCTGGACTTACATTCAGTAACGAACTCATCTCCAG 738427 Query 102305 TGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||| | ||| ||| || || Sbjct 738428 GGACGAGGGATTACACACAGACTTCGC 738454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620688868727280