Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq569 159 4e-34 >seq569 Length=874483 Score = 159 bits (176), Expect = 4e-34 Identities = 347/516 (67%), Gaps = 14/516 (3%) Strand=Plus/Minus Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330 ||||| || || || | |||| ||| || || ||||||||| ||| | || ||||| Sbjct 340260 TGTGAGATAACTGGTTATGATCATATTTCCTTCCAACCTAACAGTGGAGCTCAAGGTGAA 340201 Query 159331 TATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGA---TAAAAGA 159387 ||||| || || |||||| |||| | | | ||| |||| | ||| || Sbjct 340200 TATGCTGGGCTTAGAGCAATTATGTCATATCTTGAG---TCAAAAGATCAAATTAACAGG 340144 Query 159388 AATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCA 159447 ||||| || | || || ||| || ||||||||||| || ||||| || |||||| Sbjct 340143 AATGTCTGCCTCATCCCCCTGTCTGCTCATGGAACTAACCCAGCATCTGCTCAGATGGCT 340084 Query 159448 GGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTA 159507 || ||||| ||||| ||||| | ||||| | || || || | ||| | Sbjct 340083 GGCATGAATGTTGTGCCAATCAAGACAAAAACAGATGGTACAATTGATATGGATGATGTC 340024 Query 159508 GAGAAGAAA---GCAA-TCATGAATACATTTGAACTGTCATGTATTATGATTACATATCC 159563 ||| ||| || |||| || ||| | || ||||| | ||||| || || || Sbjct 340023 AAGAGTAAAATTGCTGCTCATAAAGACAAT----CTTGCATGTCTCATGATAACTTACCC 339968 Query 159564 ATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAA 159623 || || ||||||| |||||| ||| | |||| ||| | |||| ||||| Sbjct 339967 TTCAACCAATGGTGTGTTTGAAGCAACAGTTGCTGAGATTTGTGATCTTGTCCATGAAGC 339908 Query 159624 TGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACC 159683 ||| || |||||||| ||||||||||| ||| | ||||| || || ||||| || Sbjct 339907 TGGGGGACAGGTATACCTTGATGGTGCTAATATGAATGCTCAAGTTGGTCTTTGCCGTCC 339848 Query 159684 ATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACA 159743 | || ||||| |||||||| ||||||| ||| | || || || ||||| ||||| || Sbjct 339847 TGGAGATTATGGATCAGATGTAAGTCATCTTAACCTGCACAAAACTTTCTGCATTCCTCA 339788 Query 159744 TGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||| || || || || | || |||||||| || Sbjct 339787 TGGAGGAGGTGGGCCAGGAATGGGACCTATTGGAGT 339752 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 158487 ATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTC 158546 ||||||||| || | || ||||| || | || ||||||||||| | || ||| Sbjct 341143 ATTCTTTGCTACCAAGAACCAGTATGTTAGGCATATGCCTGGCAGAATGATTGG--AGTG 341086 Query 158547 AGTAGATA-GC-GAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCAT 158604 | ||| | || || || ||| | | |||||| ||||| ||||| ||||| |||||| Sbjct 341085 ACCAGAGATGCAGATGGAAATGAGTGCTTCAGATTGGCACTGCAGACAAGAGAACAGCAT 341026 Query 158605 ATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATG 158664 || ||||||| || || || || || |||||||||||||| || |||| || || Sbjct 341025 ATTCGAAGAGATAAGGCGACTTCCAATATTTGCACAGCACAAGCTCTTTTGGCAAACATA 340966 Query 158665 TCTGGGTTCTATGCAGCATATCATGGTGCAGA 158696 || | | ||||| | ||| ||||| |||| Sbjct 340965 TCAGCAATGTATGCTGTATACCATGGACCAGA 340934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588000487934640