Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq6057 170 4e-37 seq1779 102 2e-16 seq4046 100 6e-16 seq347 95.1 3e-14 >seq6057 Length=130802 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || || | ||||||||||||||| || || || |||||||||||||||| ||||| Sbjct 36688 TCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGT 36747 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || |||||||| || |||||||| | || || || ||||| ||||| || Sbjct 36748 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCC 36807 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || ||| |||||||||||| |||| | || || || || Sbjct 36808 TTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACCTCCAG 36867 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| ||||| || || ||||| | ||||| Sbjct 36868 GGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| || | ||| || |||||||| || || || |||||||||||||||| |||||| Sbjct 36461 CTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTT 36520 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || ||||| || || ||||| || |||||||| | || || || ||||| ||||| ||| Sbjct 36521 CTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCT 36580 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || ||||| ||||| || ||| |||||||| ||| | || | || || || ||| Sbjct 36581 TCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGG 36640 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || || || || || ||||| | ||||| Sbjct 36641 GTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Score = 125 bits (138), Expect = 2e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || || | ||||||||||||||| || || || |||||||| ||||| | ||||| Sbjct 39005 TCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGACAGAGT 39064 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || |||||||| || |||||||| | || || || ||||||||||| || Sbjct 39065 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCC 39124 Query 195039 TTCTTTGTCTTGAA 195052 ||| ||||| |||| Sbjct 39125 TTCCTTGTCCTGAA 39138 Score = 120 bits (132), Expect = 7e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || || | ||| || |||||||| || || || || ||||||||||||| ||||| Sbjct 36916 TCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGT 36975 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || |||||||| || |||||||| | || || || ||||||||||| || Sbjct 36976 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCC 37035 Query 195039 TTCTTTGTCTTGAA 195052 ||| ||||| |||| Sbjct 37036 TTCCTTGTCCTGAA 37049 Score = 120 bits (132), Expect = 7e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || || | ||| || |||||||| || || || ||||||||||| |||| ||||| Sbjct 37504 TCTAAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGACAGAGT 37563 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || |||||||| || |||||||| | || || || ||||| ||||| || Sbjct 37564 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCC 37623 Query 195039 TTCTTTGTCTTGAA 195052 ||||||||| |||| Sbjct 37624 TTCTTTGTCCTGAA 37637 Score = 113 bits (124), Expect = 1e-19 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || || | ||| || |||||||| || || || |||||||||||||||| ||||| Sbjct 42232 TCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGT 42291 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || |||||||| || || ||||| | || || || ||||| ||||| || Sbjct 42292 TCTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATTCC 42351 Query 195039 TTCTTTGTCTTG 195050 ||| ||||| || Sbjct 42352 TTCCTTGTCCTG 42363 >seq1779 Length=2408633 Score = 102 bits (112), Expect = 2e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 194917 TATCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGA 194976 || || || || | |||||||||||| || || || || |||||||| ||||| | ||| Sbjct 504822 TACCTCAGCCTGAGAACAAGGTGAAGGGTAGATTCCTTCTGAATATTATAATCAGATAGA 504881 Query 194977 GTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATG 195036 ||||| ||||| || |||||||| || |||||||| | || || || ||||| ||||| Sbjct 504882 GTTCTTCCATCCTCTAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATT 504941 Query 195037 CCTTCTTTGTC 195047 || || || || Sbjct 504942 CCCTCCTTATC 504952 >seq4046 Length=337920 Score = 100 bits (110), Expect = 6e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 160574 AGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAA 160633 ||||| || || | |||||||| || |||| | | ||||| ||||||||||| || | Sbjct 121777 AGAGCTAGGGATCTGTTCTACGCTATGTGGATTCCTGATCTCTTCATGAAGAGGGTAGAG 121836 Query 160634 GACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTAT 160693 | |||| |||||||| || | ||||| | | | ||||||||| |||| |||| Sbjct 121837 GCTGATGGAGATTGGAGTCTAATGTGTCCTGACCAGTCCCCTGGACTTCATGAGGTTTGG 121896 Query 160694 GGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGA 160738 || |||||||||| |||| ||||| | ||| ||||| || ||| Sbjct 121897 GGAGACGAGTTCGAGGCTCTGTATGAGAAATATGAAAAGGAAGGA 121941 >seq347 Length=1176111 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || |||||||||||||| | || ||||| |||||||| ||||| ||||| Sbjct 1038886 GTAGACTCCTTCTGAATATTGTAATCTGAGAGGGTTCTTCCATCTTCCAGCTGTTTACCA 1038827 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| | || || || ||||| ||||| || || ||||| || Sbjct 1038826 GCGAAGATCAATCTCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTG 1038780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109383529107533