Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 170 4e-37
seq1779 102 2e-16
seq4046 100 6e-16
seq347 95.1 3e-14
>seq6057
Length=130802
Score = 170 bits (188), Expect = 4e-37
Identities = 171/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || || | ||||||||||||||| || || || |||||||||||||||| |||||
Sbjct 36688 TCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGT 36747
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| ||||| || |||||||| || |||||||| | || || || ||||| ||||| ||
Sbjct 36748 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCC 36807
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| ||||| || || || ||| |||||||||||| |||| | || || || ||
Sbjct 36808 TTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACCTCCAG 36867
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| | |||||||| ||||| || || ||||| | |||||
Sbjct 36868 GGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909
Score = 141 bits (156), Expect = 2e-28
Identities = 164/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979
||||| || | ||| || |||||||| || || || |||||||||||||||| ||||||
Sbjct 36461 CTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTT 36520
Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
|| ||||| || || ||||| || |||||||| | || || || ||||| ||||| |||
Sbjct 36521 CTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCT 36580
Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099
|| ||||| ||||| || ||| |||||||| ||| | || | || || || |||
Sbjct 36581 TCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGG 36640
Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | || || || || || || || ||||| | |||||
Sbjct 36641 GTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Score = 125 bits (138), Expect = 2e-23
Identities = 108/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || || | ||||||||||||||| || || || |||||||| ||||| | |||||
Sbjct 39005 TCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGACAGAGT 39064
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| ||||| || |||||||| || |||||||| | || || || ||||||||||| ||
Sbjct 39065 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCC 39124
Query 195039 TTCTTTGTCTTGAA 195052
||| ||||| ||||
Sbjct 39125 TTCCTTGTCCTGAA 39138
Score = 120 bits (132), Expect = 7e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || || | ||| || |||||||| || || || || ||||||||||||| |||||
Sbjct 36916 TCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGT 36975
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| ||||| || |||||||| || |||||||| | || || || ||||||||||| ||
Sbjct 36976 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCC 37035
Query 195039 TTCTTTGTCTTGAA 195052
||| ||||| ||||
Sbjct 37036 TTCCTTGTCCTGAA 37049
Score = 120 bits (132), Expect = 7e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || || | ||| || |||||||| || || || ||||||||||| |||| |||||
Sbjct 37504 TCTAAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGACAGAGT 37563
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| ||||| || |||||||| || |||||||| | || || || ||||| ||||| ||
Sbjct 37564 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCC 37623
Query 195039 TTCTTTGTCTTGAA 195052
||||||||| ||||
Sbjct 37624 TTCTTTGTCCTGAA 37637
Score = 113 bits (124), Expect = 1e-19
Identities = 104/132 (79%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || || | ||| || |||||||| || || || |||||||||||||||| |||||
Sbjct 42232 TCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGT 42291
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| ||||| || |||||||| || || ||||| | || || || ||||| ||||| ||
Sbjct 42292 TCTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATTCC 42351
Query 195039 TTCTTTGTCTTG 195050
||| ||||| ||
Sbjct 42352 TTCCTTGTCCTG 42363
>seq1779
Length=2408633
Score = 102 bits (112), Expect = 2e-16
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 194917 TATCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGA 194976
|| || || || | |||||||||||| || || || || |||||||| ||||| | |||
Sbjct 504822 TACCTCAGCCTGAGAACAAGGTGAAGGGTAGATTCCTTCTGAATATTATAATCAGATAGA 504881
Query 194977 GTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATG 195036
||||| ||||| || |||||||| || |||||||| | || || || ||||| |||||
Sbjct 504882 GTTCTTCCATCCTCTAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATT 504941
Query 195037 CCTTCTTTGTC 195047
|| || || ||
Sbjct 504942 CCCTCCTTATC 504952
>seq4046
Length=337920
Score = 100 bits (110), Expect = 6e-16
Identities = 121/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 160574 AGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAA 160633
||||| || || | |||||||| || |||| | | ||||| ||||||||||| || |
Sbjct 121777 AGAGCTAGGGATCTGTTCTACGCTATGTGGATTCCTGATCTCTTCATGAAGAGGGTAGAG 121836
Query 160634 GACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTAT 160693
| |||| |||||||| || | ||||| | | | ||||||||| |||| ||||
Sbjct 121837 GCTGATGGAGATTGGAGTCTAATGTGTCCTGACCAGTCCCCTGGACTTCATGAGGTTTGG 121896
Query 160694 GGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGA 160738
|| |||||||||| |||| ||||| | ||| ||||| || |||
Sbjct 121897 GGAGACGAGTTCGAGGCTCTGTATGAGAAATATGAAAAGGAAGGA 121941
>seq347
Length=1176111
Score = 95.1 bits (104), Expect = 3e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
|| ||||| || |||||||||||||| | || ||||| |||||||| ||||| |||||
Sbjct 1038886 GTAGACTCCTTCTGAATATTGTAATCTGAGAGGGTTCTTCCATCTTCCAGCTGTTTACCA 1038827
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| | || || || ||||| ||||| || || ||||| ||
Sbjct 1038826 GCGAAGATCAATCTCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTG 1038780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109383529107533
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |