Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6057 113 3e-20 >seq6057 Length=130802 Score = 113 bits (124), Expect = 3e-20 Identities = 167/237 (70%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 34751 ATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC 34810 |||||||||||| | ||| | ||||| |||| || ||| |||||||| || || || Sbjct 36451 ATTTCCTCCCCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATC 36510 Query 34811 CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 || || ||| | |||| ||||| || ||||| || || || | || ||||| ||| | Sbjct 36511 GGACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGG 36570 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG-----GATGCTATCGATTCACCG 34925 || | || |||||||| |||||| || ||| ||||||| |||| Sbjct 36571 GGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTA-----TCACTA 36625 Query 34926 GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || || | ||| |||||||| || || | ||||| || |||||||||||| Sbjct 36626 GCCTCGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCATA 36682 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | ||| | ||| | ||||| || ||| |||||||| || || || || Sbjct 36683 CCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAC 36742 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | |||| |||||||| ||||| || || || | || ||||| ||| | || Sbjct 36743 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGA 36802 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| || ||| | || |||| ||||| || Sbjct 36803 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACC 36862 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| ||||| || | ||||| || |||||||||||| Sbjct 36863 TCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCATA 36910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324606304299672