Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq891 84.2 2e-11 >seq891 Length=807508 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| ||| || || || || |||| ||||||||| || || | ||| ||| Sbjct 738466 AACAGCAAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGATGAGTTCGTTACTG 738407 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 ||||| | ||||||||||| |||| || || |||||||| || | || || ||| Sbjct 738406 AATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCGGCGAAACTACCA 738347 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| || ||||| || | |||||||| | | |||||| | | |||| | Sbjct 738346 GAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCGAATGTAGCGTTT 738287 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTAC 19175 || | |||||| || || ||||| || ||||| || || || Sbjct 738286 TTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCAC 738243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562060325142360