Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 159 6e-34
seq891 107 4e-18
>seq4046
Length=337920
Score = 159 bits (176), Expect = 6e-34
Identities = 753/1180 (64%), Gaps = 46/1180 (4%)
Strand=Plus/Minus
Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020
||||||| ||| | |||||||||||| ||||||||||| |||||| ||||| |||||
Sbjct 122669 GTGTAGGCCTCCACGCTCTCGTTGTTGCCCAGAATCTGAGCAGTGGAAGCTGTTGGCATA 122610
Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCC 213080
||||||| || ||| |||||| || || |||| | || || | |||| |||
Sbjct 122609 GGAGCCAGGAGCAGAGAGTTCCTTACACCATGCTTTGCAATCTGGGCCTTCAGCTTAGCC 122550
Query 213081 CAGTCCC--ATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGA 213138
|| || | || ||| ||| | ||| |||||| ||| | ||||
Sbjct 122549 CAATCATGGAGCT--CAGTG-GGTGTTACTCC--------CCACATATCATATTGCAGCC 122501
Query 213139 TGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCT 213198
| || | || || || || | || | || | || | || ||| ||||
Sbjct 122500 TACCCTGACTAACCGGAGAACCAGGATAGGTTTCATAAGTACCCAATTGCTCGGCAAGCT 122441
Query 213199 CGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCT 213258
| ||| || | ||| || ||||||| || |||||||| || | |||| || |
Sbjct 122440 CACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTTTAGAAGTT 122381
Query 213259 TGGCCTCTGGGGACGTGAA-GGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGG 213317
| || || || ||| ||| ||| ||||| | | || |||||||||| |||||
Sbjct 122380 TAGCTTCGTTAGATTCGAATGGGAATC-TCATGAGAATGTACGCATCAGCCAGGCCCTGA 122322
Query 213318 ACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTA 213376
| || || || || |||||||| | || ||| || | || ||||| | ||| ||
Sbjct 122321 ATACCAATACCAATTGGTCTGTGACGCATGTTGCTTTTCCGTGC-CTCCTTAACGGGATA 122263
Query 213377 AAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAG 213436
| || |||||| || ||||||||||| | | ||| || |||| || | |||
Sbjct 122262 GTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGGATACCTTCTTCAG 122203
Query 213437 GTACTCGTGATTGAACACGTAGCCCCCGTCCTG---CACAAACTCAGGCAGGGCGATGCT 213493
| |||| || | ||| | ||| | ||| ||| | ||| |||
Sbjct 122202 CTTCTCG------AAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGGCAATGGA 122149
Query 213494 GGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAG 213553
||| |||||||| ||||||||||| | || | | | ||| || | ||| || ||||||||
Sbjct 122148 GGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCACAG 122089
Query 213554 GTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTT 213613
|| |||| |||||| || || ||||| ||||| || ||| ||| | |||||
Sbjct 122088 ATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGCGTCCTT 122029
Query 213614 GTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTA 213673
||| | |||||| || | |||||||| | ||||| | | || |||||| |
Sbjct 122028 GTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACCAGAGCTG 121969
Query 213674 CCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTC 213733
| || || || | | ||| ||| | | || || | || || || |
Sbjct 121968 CTGAGCTTTTACAGTCTTCAAGACGCGTCCTTCCTT---TTCATATTTCTCATACAGAGC 121912
Query 213734 GTTGAATTCGTGGCCCCAGACCCTGTCCAGTCC--CGGACAGGATGCGGGACACATGAGG 213791
| ||| |||| ||||| ||| | ||||| |||| || | |||||||| ||
Sbjct 121911 CTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGG--TCAGGACACATTAGA 121854
Query 213792 CTCCAGTCCCCGTCA-TCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGT 213850
||||| || || ||| |||| || |||| |||||| || || || | ||||| |||
Sbjct 121853 CTCCAATCTCCATCAGCCTCT-ACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTA 121795
Query 213851 GAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTC 213910
|||||| ||||| | || |||| || ||| || || || ||| | || ||
Sbjct 121794 GAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCAAGAACTC 121735
Query 213911 AAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTC---TTGCC 213967
|| || || | ||||| || || | |||||| || || || || || ||| || ||
Sbjct 121734 GAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTATTTCC 121675
Query 213968 GCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027
||||| || || ||||| | || || | | ||| | || | || ||||||
Sbjct 121674 TCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACCCGTT 121615
Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCC----GGAGGCCCTCAGGTTGCTCATGG 214083
|| || ||||||||||| || || || || || | | | ||| || |||
Sbjct 121614 AGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAG--TGAACAT-- 121559
Query 214084 AGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123
|||||| || || ||||| |||||||||| | |||||
Sbjct 121558 TGAGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCA 121519
>seq891
Length=807508
Score = 107 bits (118), Expect = 4e-18
Identities = 165/235 (70%), Gaps = 3/235 (1%)
Strand=Plus/Minus
Query 48108 GCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGA 48167
|||||||| || | |||| |||||| ||||| |||| || || ||||||| | ||
Sbjct 738477 GCAGGTGCCTGA---ACAGCAAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGA 738421
Query 48168 TGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTG 48227
|||| |||| ||| || |||||||| | || | || || | ||||||||| |
Sbjct 738420 TGAGTTCGTTACTGAATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGG 738361
Query 48228 CCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTC 48287
| |||||| |||||||||||||| || || || | || || ||| | | || ||
Sbjct 738360 CGGCGAAACTACCAGAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGG 738301
Query 48288 CGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTT 48342
|||| | |||||| || | ||||| || |||||||||||||| |||||
Sbjct 738300 CGAATGTAGCGTTTTTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTT 738246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931452466940160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |