Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4046 159 6e-34 seq891 107 4e-18 >seq4046 Length=337920 Score = 159 bits (176), Expect = 6e-34 Identities = 753/1180 (64%), Gaps = 46/1180 (4%) Strand=Plus/Minus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||| ||| | |||||||||||| ||||||||||| |||||| ||||| ||||| Sbjct 122669 GTGTAGGCCTCCACGCTCTCGTTGTTGCCCAGAATCTGAGCAGTGGAAGCTGTTGGCATA 122610 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCC 213080 ||||||| || ||| |||||| || || |||| | || || | |||| ||| Sbjct 122609 GGAGCCAGGAGCAGAGAGTTCCTTACACCATGCTTTGCAATCTGGGCCTTCAGCTTAGCC 122550 Query 213081 CAGTCCC--ATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGA 213138 || || | || ||| ||| | ||| |||||| ||| | |||| Sbjct 122549 CAATCATGGAGCT--CAGTG-GGTGTTACTCC--------CCACATATCATATTGCAGCC 122501 Query 213139 TGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCT 213198 | || | || || || || | || | || | || | || ||| |||| Sbjct 122500 TACCCTGACTAACCGGAGAACCAGGATAGGTTTCATAAGTACCCAATTGCTCGGCAAGCT 122441 Query 213199 CGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCT 213258 | ||| || | ||| || ||||||| || |||||||| || | |||| || | Sbjct 122440 CACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTTTAGAAGTT 122381 Query 213259 TGGCCTCTGGGGACGTGAA-GGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGG 213317 | || || || ||| ||| ||| ||||| | | || |||||||||| ||||| Sbjct 122380 TAGCTTCGTTAGATTCGAATGGGAATC-TCATGAGAATGTACGCATCAGCCAGGCCCTGA 122322 Query 213318 ACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTA 213376 | || || || || |||||||| | || ||| || | || ||||| | ||| || Sbjct 122321 ATACCAATACCAATTGGTCTGTGACGCATGTTGCTTTTCCGTGC-CTCCTTAACGGGATA 122263 Query 213377 AAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAG 213436 | || |||||| || ||||||||||| | | ||| || |||| || | ||| Sbjct 122262 GTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGGATACCTTCTTCAG 122203 Query 213437 GTACTCGTGATTGAACACGTAGCCCCCGTCCTG---CACAAACTCAGGCAGGGCGATGCT 213493 | |||| || | ||| | ||| | ||| ||| | ||| ||| Sbjct 122202 CTTCTCG------AAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGGCAATGGA 122149 Query 213494 GGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAG 213553 ||| |||||||| ||||||||||| | || | | | ||| || | ||| || |||||||| Sbjct 122148 GGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCACAG 122089 Query 213554 GTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTT 213613 || |||| |||||| || || ||||| ||||| || ||| ||| | ||||| Sbjct 122088 ATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGCGTCCTT 122029 Query 213614 GTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTA 213673 ||| | |||||| || | |||||||| | ||||| | | || |||||| | Sbjct 122028 GTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACCAGAGCTG 121969 Query 213674 CCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTC 213733 | || || || | | ||| ||| | | || || | || || || | Sbjct 121968 CTGAGCTTTTACAGTCTTCAAGACGCGTCCTTCCTT---TTCATATTTCTCATACAGAGC 121912 Query 213734 GTTGAATTCGTGGCCCCAGACCCTGTCCAGTCC--CGGACAGGATGCGGGACACATGAGG 213791 | ||| |||| ||||| ||| | ||||| |||| || | |||||||| || Sbjct 121911 CTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGG--TCAGGACACATTAGA 121854 Query 213792 CTCCAGTCCCCGTCA-TCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGT 213850 ||||| || || ||| |||| || |||| |||||| || || || | ||||| ||| Sbjct 121853 CTCCAATCTCCATCAGCCTCT-ACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTA 121795 Query 213851 GAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTC 213910 |||||| ||||| | || |||| || ||| || || || ||| | || || Sbjct 121794 GAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCAAGAACTC 121735 Query 213911 AAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTC---TTGCC 213967 || || || | ||||| || || | |||||| || || || || || ||| || || Sbjct 121734 GAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTATTTCC 121675 Query 213968 GCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 ||||| || || ||||| | || || | | ||| | || | || |||||| Sbjct 121674 TCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACCCGTT 121615 Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCC----GGAGGCCCTCAGGTTGCTCATGG 214083 || || ||||||||||| || || || || || | | | ||| || ||| Sbjct 121614 AGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAG--TGAACAT-- 121559 Query 214084 AGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 |||||| || || ||||| |||||||||| | ||||| Sbjct 121558 TGAGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCA 121519 >seq891 Length=807508 Score = 107 bits (118), Expect = 4e-18 Identities = 165/235 (70%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 48108 GCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGA 48167 |||||||| || | |||| |||||| ||||| |||| || || ||||||| | || Sbjct 738477 GCAGGTGCCTGA---ACAGCAAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGA 738421 Query 48168 TGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTG 48227 |||| |||| ||| || |||||||| | || | || || | ||||||||| | Sbjct 738420 TGAGTTCGTTACTGAATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGG 738361 Query 48228 CCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTC 48287 | |||||| |||||||||||||| || || || | || || ||| | | || || Sbjct 738360 CGGCGAAACTACCAGAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGG 738301 Query 48288 CGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTT 48342 |||| | |||||| || | ||||| || |||||||||||||| ||||| Sbjct 738300 CGAATGTAGCGTTTTTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTT 738246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931452466940160