Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6057 86.0 5e-12 seq4046 84.2 2e-11 >seq6057 Length=130802 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| || ||| | ||| |||||| |||||| | |||||||| || || || |||| Sbjct 42360 GACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGCTGGAG 42301 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | |||| || ||||||| || ||||| || ||||||||||| || |||| | Sbjct 42300 GATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGGTTCTC 42241 Query 28767 AGATTACGAGGAGGGAT 28783 || | ||||||| || Sbjct 42240 AGGCTTAGAGGAGGTAT 42224 >seq4046 Length=337920 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 || || |||||| | ||| |||||| |||||| | |||||||| || |||||| | ||| Sbjct 168575 GATAAGGAGGGAATCCCCCCAGATCAGCAGAGATTGATCTTTGCTGGGAAACAACTTGAA 168516 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | |||| | | ||||| ||||| || ||||||||||| || || |||| | Sbjct 168515 GATGGCAGAACTCTATCTGATTACAACATCCAGAAAGAATCTACCCTTCATCTGGTTCTC 168456 Query 28767 AGATTACGAGGAGG 28780 || | ||||||| Sbjct 168455 AGGCTTAGAGGAGG 168442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425369031299721