Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 86.0 5e-12
seq4046 84.2 2e-11
>seq6057
Length=130802
Score = 86.0 bits (94), Expect = 5e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706
||||| || ||| | ||| |||||| |||||| | |||||||| || || || ||||
Sbjct 42360 GACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGCTGGAG 42301
Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766
||| | |||| || ||||||| || ||||| || ||||||||||| || |||| |
Sbjct 42300 GATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGGTTCTC 42241
Query 28767 AGATTACGAGGAGGGAT 28783
|| | ||||||| ||
Sbjct 42240 AGGCTTAGAGGAGGTAT 42224
>seq4046
Length=337920
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706
|| || |||||| | ||| |||||| |||||| | |||||||| || |||||| | |||
Sbjct 168575 GATAAGGAGGGAATCCCCCCAGATCAGCAGAGATTGATCTTTGCTGGGAAACAACTTGAA 168516
Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766
||| | |||| | | ||||| ||||| || ||||||||||| || || |||| |
Sbjct 168515 GATGGCAGAACTCTATCTGATTACAACATCCAGAAAGAATCTACCCTTCATCTGGTTCTC 168456
Query 28767 AGATTACGAGGAGG 28780
|| | |||||||
Sbjct 168455 AGGCTTAGAGGAGG 168442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425369031299721
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |