Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq569 87.8 2e-12 >seq569 Length=874483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 139266 TCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTG 139325 |||| ||||| ||| | ||||| | | | || || ||||| | || |||||||||||| Sbjct 340934 TCTGGTCCATGGTATACAGCATACATTGCTGATATGTTTGCCAAAAGAGCTTGTGCTGTG 340993 Query 139326 CAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAAT 139385 || || || || || || ||||||| ||||||||| ||||| || || ||||| ||| Sbjct 340994 CAAATATTGGAAGTCGCCTTATCTCTTCGAATATGCTGTTCTCTTGTCTGCAGTGCCAAT 341053 Query 139386 CTGTATGCA-GGATTGCCTTC-GC-TGTCCACTGACTGACCTACAATTCTGCCAGGTATC 139442 ||| | ||| ||| || || || | || | ||| || | ||||||||||| || Sbjct 341054 CTG-AAGCACTCATTTCCATCTGCATCTCTGGTCACT--CCAATCATTCTGCCAGGCATA 341110 Query 139443 TTTCTCTTATACTTGTCTGTTGTTGCAAAGAAT 139475 | || ||||| || | || ||||||||| Sbjct 341111 TGCCTAACATACTGGTTCTTGGTAGCAAAGAAT 341143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578948468625480