Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq891 104 5e-17 seq4046 91.5 3e-13 seq6057 89.7 1e-12 >seq891 Length=807508 Score = 104 bits (114), Expect = 5e-17 Identities = 177/254 (70%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 || || || || || || ||||| ||||||||||| || || | ||| ||||| || || Sbjct 738460 AAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGATGAGTTCGTTACTGAATGTA 738401 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940 | ||| ||||| | |||| ||| || | ||| || || | || ||||||| ||| ||| Sbjct 738400 AGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCGGCGAAACTACCAGAGAAG 738341 Query 49941 AATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACAT-TAATTTATCATC 49999 || || || || ||| | ||||| || || |||||| | | || | ||| || Sbjct 738340 AAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCGAATGTAGCGTTTTTCGCG 738281 Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059 | | ||||| || | ||||| ||||| ||||| || | | ||| || |||| ||||| Sbjct 738280 TTA-ATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCACGGCAGGGATGGTTTCGATAGC 738222 Query 50060 TTTAAATAATTCAT 50073 || || | || || Sbjct 738221 GTTGAACAGTTTAT 738208 >seq4046 Length=337920 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| |||||||| | | || | ||| | |||| ||||| ||| || |||||||| Sbjct 168441 ACCTCCTCTAAGCCTGAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGA 168500 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| || | |||||| ||||||||||| |||||||| ||||| || || Sbjct 168501 TAGAGTTCTGCCATCTTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGATCTGGGGG 168560 Query 192429 TATTCCTTCTTTATC 192443 ||||| || ||||| Sbjct 168561 GATTCCCTCCTTATC 168575 >seq6057 Length=130802 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||| || | |||| | |||| |||| ||| || ||||| ||||| |||||| Sbjct 36500 ATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTC 36559 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || |||||||| || || || || || || || || || | Sbjct 36560 TGCTGATCTGGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTA 36619 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || | || || || || || ||||||||||| ||||| || || | || |||||| Sbjct 36620 TCACTAGCCTCGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGC 36679 Query 192535 AT 192536 || Sbjct 36680 AT 36681 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||||||| | | || | ||| | ||||| || || ||||| ||||| Sbjct 42224 ATACCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCG 42283 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| |||| || || ||||||||||| |||||||| ||||| || Sbjct 42284 GACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGG 42343 Query 192427 GGTATTCCTTCTTTATCTTG 192446 || |||||||| || || || Sbjct 42344 GGAATTCCTTCCTTGTCCTG 42363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984392978428650