Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6057 87.8 3e-12 >seq6057 Length=130802 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| || | || || | | || |||| ||| || ||||| || || ||||| Sbjct 36499 AATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCT 36558 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || || || |||||||| || || || || || || || || || | Sbjct 36559 CTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCT 36618 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| | || || || || || ||||||||||| ||||| || || | ||| ||||| Sbjct 36619 ATCACTAGCCTCGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTG 36678 Query 172067 CAT 172069 ||| Sbjct 36679 CAT 36681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905057943334200