Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4046 172 2e-37 >seq4046 Length=337920 Score = 172 bits (190), Expect = 2e-37 Identities = 673/1044 (64%), Gaps = 27/1044 (3%) Strand=Plus/Minus Query 155312 TTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTC 155371 ||||||||| | | ||||| || |||||||| | ||| || | |||||| || | Sbjct 122430 TTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTTTAGAAGTTTAGCTTCGTT 122371 Query 155372 AGATGTAAATGCGATATCCATCTTGAAAA---ATGTGTCGGCTAAACCCTGAACTCCAAT 155428 |||| |||| || ||| || ||| || | | || || | ||||||| ||||| Sbjct 122370 AGATTCGAATGGGA-ATC--TCATGAGAATGTACGCATCAGCCAGGCCCTGAATACCAAT 122314 Query 155429 ACCGACTGGGC---GATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGGTAAAAATT 155485 ||| | ||| | || || ||| |||| | | || || ||| || || |||| Sbjct 122313 ACCAATTGGTCTGTGACGCATGT---TGCTTTTCCGTGCCTCCTTAACGGGATAGTAATT 122257 Query 155486 CACATCAATAATGTTATTTAAATTTGT--AACCAATACCTTGGTTACGT-CTGCTAATTT 155542 || || ||||| || || | ||| | | ||| |||||| ||| | || | | || Sbjct 122256 AACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAA--CCTTGGATACCTTCTTC-AGCTT 122200 Query 155543 CACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATT 155602 | | ||||| | || || || || || ||||| | |||| || || || || Sbjct 122199 CTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGGCAATGGAGGCTAGGTT 122140 Query 155603 ACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACT 155662 || || || ||| | | || |||||| || || || |||||| || || | Sbjct 122139 GCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCACAGATTTGAGCA 122080 Query 155663 CTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAAT 155722 |||||||| |||| ||||| |||||| ||||| |||||||| || |||||||| | || Sbjct 122079 TTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGCGTCCTTGTACAACAT 122020 Query 155723 GTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATT 155782 ||| || ||||| ||||| || || | || | ||| |||||| | | || || Sbjct 122019 GTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACCAGAGCTGCTGAGCTTT 121960 Query 155783 AATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTC 155842 | ||| | | |||||| ||||||||| |||||| | | | || || Sbjct 121959 TACAGTCTTCAAGACGCGTCCTTCCTTTTCATATTTCTCATACAGAGCCTCGAACTCGTC 121900 Query 155843 ACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATT 155902 || || ||| ||||||||| ||| || || || | || |||| | || Sbjct 121899 TCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATTAGACTCCAATCTCCATC 121840 Query 155903 ACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC 155962 | | ||| | || ||| || | |||| ||| ||||| ||||| || ||||| || Sbjct 121839 AGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTAGAACAGATCCCTAGC 121780 Query 155963 CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATG 156022 | |||||| | || ||||||||| | || ||||| || |||||| ||| Sbjct 121779 TCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCAAGAACTCGAAAATATCTCCATG 121720 Query 156023 GTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATA 156079 || || || || ||||| || ||| ||||| || |||||||| ||||| Sbjct 121719 CCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTATTTCCTCCCTGATCAACATA 121660 Query 156080 CCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTG-CCATTGG 156138 | || || ||||| || || | ||||||||||| | || || | |||| || |||| Sbjct 121659 TCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACCCGTTAG-AGTGACCGTTGG 121601 Query 156139 TTCCGCGAATATGCGAACCAGATGAG--CGAACATTATGAATATGTAGTCCAATACCACC 156196 ||||| ||| | || || ||||| || | | |||| || || || || || || Sbjct 121600 TTCCGGCAATGTATGACCC--ATGAGCACGGATACAGTGAACATTGAGCCCGATCCCTCC 121543 Query 156197 TGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATC 156256 | | || || ||| ||||||| | || | |||| | |||||||||| |||||||| Sbjct 121542 GGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATCGTAAATACCTTCGATAGAATC 121483 Query 156257 ATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAA 156316 |||| | || || |||| || | || || || || || | ||||| || Sbjct 121482 CGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGGACGGGGAGTAGCGGCGTTAAA 121423 Query 156317 TAGTGTAGGTGTTGCATGAATAAA 156340 ||| || || | || ||| |||| Sbjct 121422 TAGGGTCGGAGAAGCGTGAGTAAA 121399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471687500982963