Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2557 111 2e-18 >seq2557 Length=1824507 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| | | || || | || | |||||||||||| || | | || Sbjct 1620909 GCTTGGCCAATTCTCCGGGAAGGAGGAGCCTGACAGAGGTCTGGATCTCCCGGGAGGTGA 1620968 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| |||| ||| || |||| |||| | | || | Sbjct 1620969 TGGTGGATCTCTTGTTGTAGTGGGCCAATCGGGAAGCTTCGGCAGCGATCCTGGAGAAGA 1621028 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||||||||| |||||||||| ||| | |||| |||||| || ||| |||| Sbjct 1621029 TATCGTTGACAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATACCGGTGTCAGGGT 1621088 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||||||||||| |||||||||||| Sbjct 1621089 GGACCTGCTTGAGGACCTTGTAGATG 1621114 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| | | || || | || | |||||||||||| || | | || Sbjct 1641277 GCTTGGCCAACTCTCCGGGAAGGAGGAGCCTGACAGAGGTCTGGATCTCCCGGGAGGTGA 1641218 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| ||||| ||| || |||| |||| | | || | Sbjct 1641217 TGGTGGATCTCTTGTTGTAGTGGGCCAGTCGGGAAGCTTCGGCAGCGATCCTGGAGAAGA 1641158 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||||||||| |||||||||| ||| | |||| |||||| || ||| |||| Sbjct 1641157 TATCGTTGACAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATACCGGTGTCAGGGT 1641098 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||||||||||| |||||||||||| Sbjct 1641097 GGACCTGCTTGAGGACCTTGTAGATG 1641072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106573035751983