Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 114 1e-20
seq4668 93.3 4e-14
seq347 87.8 2e-12
>seq6057
Length=130802
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || ||||||||||||| || || || || || || || |
Sbjct 36681 ATGCAGATCTTCGTCAAGACCTTAACCGGTAAAACCATCACCCTGGAGGTCGAGGCTAGT 36622
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| | | || |||| ||| | ||||| || ||||| |||||||| || || |||||
Sbjct 36621 GATAGCATCGAGAACGTTAAGGC-CAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCA 36563
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | |||||||| || || || || ||||||||| |||| |||| ||||| ||
Sbjct 36562 GCAGAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTACAA 36503
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||||| |||||||| || || || ||||
Sbjct 36502 TATTCAGAAGGAATCAACTCTTCATCTGGT 36473
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | ||||| || || || || || || || || || |
Sbjct 36909 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGCTAGT 36850
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||| | || |||| ||| | || |||||| ||||| |||||||| || || |||||
Sbjct 36849 GACAGCATTGAGAACGTTAAGGCCAA-GATCCAGGACAAGGAAGGAATTCCCCCAGATCA 36791
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | |||||||| || || || |||||||||||| |||| |||| ||||| ||
Sbjct 36790 GCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAA 36731
Query 24883 CATTCAAAAGGAATCGACACTACAC 24907
||||| |||||||| || || |||
Sbjct 36730 TATTCAGAAGGAATCTACTCTTCAC 36706
Score = 98.7 bits (108), Expect = 9e-16
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 24794 CAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTG 24853
|| ||||| |||||||| ||||| ||||| || | |||||||| || || || ||||||
Sbjct 39136 CAGGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTG 39077
Query 24854 GAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|||||| |||| |||| |||||||| ||||| |||||||| || || |||
Sbjct 39076 GAGGATGGAAGAACTCTGTCGGATTATAATATTCAGAAGGAATCTACTCTTCAC 39023
Score = 96.9 bits (106), Expect = 3e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 24792 TCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGC 24851
|||| ||||| |||||||| || || ||||| || | ||||||||||| || || ||||
Sbjct 42365 TCCAGGACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGC 42306
Query 24852 TGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGG 24911
|||||||| |||| |||| ||||| || ||||| |||||||| || || || |||
Sbjct 42305 TGGAGGATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGG 42246
Query 24912 T 24912
|
Sbjct 42245 T 42245
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 24794 CAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTG 24853
|| ||||| |||||||| ||||| ||||| || | |||||||| || || || ||||||
Sbjct 37047 CAGGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTG 36988
Query 24854 GAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912
|||||| |||| |||| ||||| || || || |||||||| || || || ||||
Sbjct 36987 GAGGATGGAAGAACTCTGTCCGATTACAATATCCAGAAGGAATCTACTCTTCATCTGGT 36929
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 24794 CAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTG 24853
|| |||||||||||||| || || ||||| || | |||||||| || || || ||||||
Sbjct 37635 CAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTG 37576
Query 24854 GAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912
|||||| |||| |||| || || || ||||| |||||||| || || || ||||
Sbjct 37575 GAGGATGGAAGAACTCTGTCCGACTACAATATTCAGAAGGAATCAACTCTTCATCTGGT 37517
>seq4668
Length=1644770
Score = 93.3 bits (102), Expect = 4e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856
|| || || ||||| ||||| ||||| || | |||||||| || || || |||||||||
Sbjct 1192834 GATAAGGAGGGAATCCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAG 1192775
Query 24857 GATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912
||| |||| | || ||||| |||||||| |||||||| || || ||||||||
Sbjct 1192774 GATGGAAGAACTCTATCCGATTACAACATTCAGAAGGAATCCACCCTTCACTTGGT 1192719
>seq347
Length=1176111
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 24792 TCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGC 24851
|||| ||||| || || || || || ||||| || | |||||||| || || |||||||
Sbjct 1038778 TCCAGGACAAGGAGGGGATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGTAAACAGC 1038837
Query 24852 TGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGG 24911
|||| ||| |||| | | |||||||| || ||||| ||||| || || | |||||||
Sbjct 1038838 TGGAAGATGGAAGAACCCTCTCAGATTACAATATTCAGAAGGAGTCTACCTTGCACTTGG 1038897
Query 24912 T 24912
|
Sbjct 1038898 T 1038898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449858801955720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |