Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6057 114 1e-20 seq4668 93.3 4e-14 seq347 87.8 2e-12 >seq6057 Length=130802 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||||||||||| || || || || || || || | Sbjct 36681 ATGCAGATCTTCGTCAAGACCTTAACCGGTAAAACCATCACCCTGGAGGTCGAGGCTAGT 36622 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | | || |||| ||| | ||||| || ||||| |||||||| || || ||||| Sbjct 36621 GATAGCATCGAGAACGTTAAGGC-CAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCA 36563 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || || || || ||||||||| |||| |||| ||||| || Sbjct 36562 GCAGAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTACAA 36503 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| || || || |||| Sbjct 36502 TATTCAGAAGGAATCAACTCTTCATCTGGT 36473 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || || || || || || | Sbjct 36909 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGCTAGT 36850 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | || |||| ||| | || |||||| ||||| |||||||| || || ||||| Sbjct 36849 GACAGCATTGAGAACGTTAAGGCCAA-GATCCAGGACAAGGAAGGAATTCCCCCAGATCA 36791 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || || || |||||||||||| |||| |||| ||||| || Sbjct 36790 GCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAA 36731 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||||| || || ||| Sbjct 36730 TATTCAGAAGGAATCTACTCTTCAC 36706 Score = 98.7 bits (108), Expect = 9e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 24794 CAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTG 24853 || ||||| |||||||| ||||| ||||| || | |||||||| || || || |||||| Sbjct 39136 CAGGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTG 39077 Query 24854 GAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||| |||| |||| |||||||| ||||| |||||||| || || ||| Sbjct 39076 GAGGATGGAAGAACTCTGTCGGATTATAATATTCAGAAGGAATCTACTCTTCAC 39023 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24792 TCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGC 24851 |||| ||||| |||||||| || || ||||| || | ||||||||||| || || |||| Sbjct 42365 TCCAGGACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGC 42306 Query 24852 TGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGG 24911 |||||||| |||| |||| ||||| || ||||| |||||||| || || || ||| Sbjct 42305 TGGAGGATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGG 42246 Query 24912 T 24912 | Sbjct 42245 T 42245 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24794 CAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTG 24853 || ||||| |||||||| ||||| ||||| || | |||||||| || || || |||||| Sbjct 37047 CAGGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTG 36988 Query 24854 GAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||| |||| |||| ||||| || || || |||||||| || || || |||| Sbjct 36987 GAGGATGGAAGAACTCTGTCCGATTACAATATCCAGAAGGAATCTACTCTTCATCTGGT 36929 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24794 CAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTG 24853 || |||||||||||||| || || ||||| || | |||||||| || || || |||||| Sbjct 37635 CAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTG 37576 Query 24854 GAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||| |||| |||| || || || ||||| |||||||| || || || |||| Sbjct 37575 GAGGATGGAAGAACTCTGTCCGACTACAATATTCAGAAGGAATCAACTCTTCATCTGGT 37517 >seq4668 Length=1644770 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856 || || || ||||| ||||| ||||| || | |||||||| || || || ||||||||| Sbjct 1192834 GATAAGGAGGGAATCCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAG 1192775 Query 24857 GATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| |||| | || ||||| |||||||| |||||||| || || |||||||| Sbjct 1192774 GATGGAAGAACTCTATCCGATTACAACATTCAGAAGGAATCCACCCTTCACTTGGT 1192719 >seq347 Length=1176111 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24792 TCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGC 24851 |||| ||||| || || || || || ||||| || | |||||||| || || ||||||| Sbjct 1038778 TCCAGGACAAGGAGGGGATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGTAAACAGC 1038837 Query 24852 TGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGG 24911 |||| ||| |||| | | |||||||| || ||||| ||||| || || | ||||||| Sbjct 1038838 TGGAAGATGGAAGAACCCTCTCAGATTACAATATTCAGAAGGAGTCTACCTTGCACTTGG 1038897 Query 24912 T 24912 | Sbjct 1038898 T 1038898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449858801955720