Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2557 159 5e-33 seq891 86.0 1e-10 >seq2557 Length=1824507 Score = 159 bits (176), Expect = 5e-33 Identities = 180/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||||| ||| ||| | | Sbjct 1620870 TGTACTTGGTGACGGCCTTGGTTCCCTCAGAGACGGCGTGCTTGGCCAATTCTCCGGGAA 1620929 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | || | |||||||||||| |||| | ||| ||| | |||||| | Sbjct 1620930 GGAGGAGCCTGACAGAGGTCTGGATCTCCCGGGAGGTGATGGTGGATCTCTTGTTGTAGT 1620989 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| || |||| |||| | | || || ||||||||||| ||||||| Sbjct 1620990 GGGCCAATCGGGAAGCTTCGGCAGCGATCCTGGAGAAGATATCGTTGACAAAGGAGTTCA 1621049 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || ||| ||||| ||||||||||| ||||||| Sbjct 1621050 TGATGCTCATGGCCTTGGAGGAGATACCGGTGTCAGGGTGGACCTGCTTGAGGACCTTGT 1621109 Query 1485710 A 1485710 | Sbjct 1621110 A 1621110 Score = 159 bits (176), Expect = 5e-33 Identities = 180/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||||| || ||| | | Sbjct 1641316 TGTACTTGGTGACGGCCTTGGTTCCCTCAGAGACGGCGTGCTTGGCCAACTCTCCGGGAA 1641257 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | || | |||||||||||| |||| | ||| ||| | |||||| | Sbjct 1641256 GGAGGAGCCTGACAGAGGTCTGGATCTCCCGGGAGGTGATGGTGGATCTCTTGTTGTAGT 1641197 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| || |||| |||| | | || || ||||||||||| ||||||| Sbjct 1641196 GGGCCAGTCGGGAAGCTTCGGCAGCGATCCTGGAGAAGATATCGTTGACAAAGGAGTTCA 1641137 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || ||| ||||| ||||||||||| ||||||| Sbjct 1641136 TGATGCTCATGGCCTTGGAGGAGATACCGGTGTCAGGGTGGACCTGCTTGAGGACCTTGT 1641077 Query 1485710 A 1485710 | Sbjct 1641076 A 1641076 >seq891 Length=807508 Score = 86.0 bits (94), Expect = 1e-10 Identities = 145/208 (70%), Gaps = 9/208 (4%) Strand=Plus/Minus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 ||| | |||||| || || || || ||||| || || |||||||| | ||| || || Sbjct 738422 GATGAGTTCGTTACTGAATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAAT 738363 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 ||| |||||| || ||||| ||||| || || || | |||||| ||| | | || Sbjct 738362 GGCGGCGAAACTACCAGAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTC 738303 Query 794475 GGCAAAAGTGTCCAGGCCCTCTTT---GTTGATCCACTTCATCGCCCACTCTGCCTTTTT 794531 ||| || || || | | ||| ||| |||||||| | ||||| ||||||||||| Sbjct 738302 GGCGAATGT----AG--CGTTTTTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTT 738249 Query 794532 CCTCACCGAGGGCACCGTGTCGATGGCG 794559 | |||| | || | || ||||| ||| Sbjct 738248 CTTCACGGCAGGGATGGTTTCGATAGCG 738221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915512521903661