Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 129 4e-25
seq4668 89.7 3e-13
seq1779 84.2 1e-11
>seq6057
Length=130802
Score = 129 bits (142), Expect = 4e-25
Identities = 170/236 (72%), Gaps = 10/236 (4%)
Strand=Plus/Plus
Query 34747 ATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC 34806
|||||||||||| | ||| || ||||| |||| || ||||||||||| || || ||
Sbjct 36451 ATTTCCTCCCCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATC 36510
Query 34807 CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTG 34866
|| || | | |||| |||||||||||||| |||||||||| || ||||| ||| |
Sbjct 36511 GGACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGG 36570
Query 34867 CGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTG 34921
|| | || |||||||| | || || || ||| ||||||| ||| |
Sbjct 36571 GGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTA-----TCACTA 36625
Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||||| || | ||| ||||| || || || | |||||| || |||||||||||
Sbjct 36626 GCCTCGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Score = 116 bits (128), Expect = 2e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| || | ||| || || ||||||| || ||||||||||| || || || ||
Sbjct 36683 CCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAC 36742
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | | |||| ||||| |||||||| |||||||||| || ||||| ||| | ||
Sbjct 36743 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGA 36802
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| || |||||||| | || || || ||| | || ||| | ||||||||
Sbjct 36803 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACC 36862
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | ||| ||||||||||| || | |||||| || |||||||||||
Sbjct 36863 TCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909
Score = 89.7 bits (98), Expect = 3e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| || | ||| || || ||||||| || ||||||||||| ||||| |||||
Sbjct 39000 CCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGAC 39059
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | | |||| ||||| |||||||| |||||||||| || ||||| ||| | ||
Sbjct 39060 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGA 39119
Query 34871 ACCCCCTCCTTGTC 34884
| || ||||||||
Sbjct 39120 ATTCCTTCCTTGTC 39133
>seq4668
Length=1644770
Score = 89.7 bits (98), Expect = 3e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| |||| |||||||||||||| || || ||||| | | |||| |||
Sbjct 1192719 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTTCTTCCATCCTCC 1192778
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887
|| |||||||| |||||||||| || ||||| ||| | || | |||||||| || ||
Sbjct 1192779 AGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATCCTT 1192837
>seq1779
Length=2408633
Score = 84.2 bits (92), Expect = 1e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 34756 CCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCT 34815
||||| ||| || || ||||||| ||| ||||||||||| ||||| || ||||| |
Sbjct 504824 CCTCAGCCTGAGAACAAGGTGAAGGGTAGATTCCTTCTGAATATTATAATCAGATAGAGT 504883
Query 34816 GCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCC 34875
| |||| || || ||||| || |||||||||| || ||||| ||| | || | ||
Sbjct 504884 TCTTCCATCCTCTAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCC 504943
Query 34876 CTCCTTGTC 34884
|||||| ||
Sbjct 504944 CTCCTTATC 504952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325665415240481
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |