Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq6057 174 3e-38 seq4046 131 3e-25 seq1779 120 6e-22 seq4668 107 4e-18 >seq6057 Length=130802 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | | ||||| | ||| ||||||||||| ||||| ||||| ||||| | Sbjct 36681 TACCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGG 36740 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || || || || || |||||||| ||||| | ||| || |||||||| | Sbjct 36741 ACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGG 36800 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || ||||| || || || || ||||| | ||| ||| || | Sbjct 36801 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGA 36860 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || ||||| ||||| || || |||||||| Sbjct 36861 CCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | || ||||| ||||| ||||| ||||| ||||| || ||| |||| || || Sbjct 36470 AGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCC 36529 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| |||||||| ||||| | ||| || |||||||| || ||||||||||| || Sbjct 36530 TCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCC 36589 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| || || || || || || ||||| ||| || || |||| || || || Sbjct 36590 TGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTGATGGTT 36649 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || ||||| || || |||||||| Sbjct 36650 TTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Score = 132 bits (146), Expect = 9e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | | ||||| | ||| ||||||||||| ||||| ||||||||||| | Sbjct 38998 TACCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCG 39057 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || || || || || |||||||| ||||| | ||| || |||||||||| Sbjct 39058 ACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAG 39117 Query 82702 GTATTCCTTCCTTATCTTGAA 82722 | ||||||||||| || |||| Sbjct 39118 GAATTCCTTCCTTGTCCTGAA 39138 Score = 123 bits (136), Expect = 5e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | | ||||| | || ||||||||||| ||||| ||||| ||||| | Sbjct 36909 TACCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGG 36968 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || || || || || |||||||| ||||| | ||| || |||||||||| Sbjct 36969 ACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAG 37028 Query 82702 GTATTCCTTCCTTATCTTGAA 82722 | ||||||||||| || |||| Sbjct 37029 GAATTCCTTCCTTGTCCTGAA 37049 Score = 120 bits (132), Expect = 6e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | | ||||| | || ||||||||||| ||||| ||||| ||||| | Sbjct 42225 TACCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGG 42284 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || || || || || |||||||||||||| | ||| || |||||||| | Sbjct 42285 ACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGG 42344 Query 82702 GTATTCCTTCCTTATCTTG 82720 | ||||||||||| || || Sbjct 42345 GAATTCCTTCCTTGTCCTG 42363 >seq4046 Length=337920 Score = 131 bits (144), Expect = 3e-25 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| | | ||||| | || || |||||||||||||| || || |||||||| Sbjct 168441 ACCTCCTCTAAGCCTGAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGA 168500 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| |||| || ||||| |||||||| ||||||||||| | ||| || |||||||| || Sbjct 168501 TAGAGTTCTGCCATCTTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGATCTGGGGG 168560 Query 82703 TATTCCTTCCTTATC 82717 ||||| |||||||| Sbjct 168561 GATTCCCTCCTTATC 168575 >seq1779 Length=2408633 Score = 120 bits (132), Expect = 6e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | ||| || |||||||| ||||| |||||||||||||||||| |||| || || Sbjct 504834 AGAACAAGGTGAAGGGTAGATTCCTTCTGAATATTATAATCAGATAGAGTTCTTCCATCC 504893 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||||| || || ||||| ||||| | ||| || |||||||| || ||||| |||||||| Sbjct 504894 TCTAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCCTCCTTATC 504952 >seq4668 Length=1644770 Score = 107 bits (118), Expect = 4e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 82601 AACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTC 82660 ||| ||||| || || ||||| ||||| || || ||||| |||||| |||| || || || Sbjct 1192718 AACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTTCTTCCATCCTC 1192777 Query 82661 TAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 || || |||||||| ||||| | ||| || ||||||||||| ||||| |||||||| Sbjct 1192778 CAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATC 1192834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981740412918761