Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4046 113 4e-20 seq6057 95.1 1e-14 >seq4046 Length=337920 Score = 113 bits (124), Expect = 4e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873 ||| ||||| || |||||||| ||||| |||||| |||||| |||||| ||| || || Sbjct 122163 GTTGACGGCAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGAC 122104 Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933 ||| || | ||||||||| ||||||||| || | |||| || ||| || || Sbjct 122103 GATTTCTGTGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCT 122044 Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||| || ||||||||||||| ||||||||| Sbjct 122043 GTTACAGGCGTCCTTGTACAACATGTACGG 122014 >seq6057 Length=130802 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| |||||||||||| || || ||||| |||||||| || Sbjct 36713 GTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGCTGCTTTCCA 36772 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | | |||||| || || || || ||||||||||| |||||| ||| Sbjct 36773 GCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTA 36832 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| |||| | | ||| || || | ||||| ||| || ||||||| || Sbjct 36833 ACGTTCTCAATGCTGTCACTAGCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTC 36892 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 36893 TTGACGAAGATCTGCAT 36909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379110998760