Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 152 1e-31
seq891 91.5 3e-13
>seq4046
Length=337920
Score = 152 bits (168), Expect = 1e-31
Identities = 448/684 (65%), Gaps = 15/684 (2%)
Strand=Plus/Plus
Query 110465 TATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTG 110524
|| ||| ||| |||| |||||||||||||| | ||| | || | | || ||
Sbjct 121401 TACTCACGCTTCTCCGACCCTATTTAACGCCGCTACTCCCCGTCCCCAGCTTTCATCCTG 121460
Query 110525 CTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC 110584
||| ||||| || | |||||||| ||||||||||| ||| | | ||| |
Sbjct 121461 CTTCCTTCTTACTATGGCCTCGGATTCTATCGAAGGTATTTACGATACCTTGAAACAGTG 121520
Query 110585 TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAA 110644
||||| || || || | ||||| || || | | ||||| ||| || | |
Sbjct 121521 CGCTCTAATCTCCAAGTCTGCCGGAGGGATCGGGCTCAATGTTCACTGTATCCGTGCTCA 121580
Query 110645 AGGAGCAAATATCGCAACAGCGAAGGGTGCTTC-AACTGGACTTG-TTCCAATGTTAAGA 110702
|| || | || || | | || ||| || ||| || ||| |||| ||| | |||
Sbjct 121581 TGGGTCATACATTGCCGGAACCAACGGTCACTCTAACGGG--TTGATTCCTATGCTGAGA 121638
Query 110703 GTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTT 110759
|| || || |||| || | |||||| |||| || || ||||||| ||| ||||
Sbjct 121639 GTGTTTAATAACACAGCCAGATATGTTGATCAGGGAGGAAATAAGAGACCTGGAGCATTC 121698
Query 110760 GCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAAT 110819
|||||||| || ||||| |||||| |||||| || || ||||| || | || |||
Sbjct 121699 GCTATCTACCTTGAACCCTGGCATGGAGATATTTTCGAGTTCTTGGATTTGAAGAAGAAT 121758
Query 110820 CAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTA 110879
|| || || || | ||||| | ||| | || || || ||||||||| | ||| |
Sbjct 121759 CATGGTAAAGAGGAGAACAGAGCTAGGGATCTGTTCTACGCTATGTGGATTCCTGATCTC 121818
Query 110880 TTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCT 110939
|||||||| | || | | |||| ||| ||| ||||||||| | | || |||
Sbjct 121819 TTCATGAAGAGGGTAGAGGCTGATGGAGATTGGAGTCTAATGTGTCCTGACCAGTCCCCT 121878
Query 110940 GGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAA 110999
|| || ||| || | ||| | ||||| || | || || || ||||||||||| |||
Sbjct 121879 GGACTTCATGAGGTTTGGGGAGACGAGTTCGAGGCTCTGTATGAGAAATATGAAAAGGAA 121938
Query 111000 GG-CAAGTTTCGCAAAC---AAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATC 111055
|| | || | | | || ||| |||||| | || |||| || |||||||
Sbjct 121939 GGACGCGTCTTGAAGACTGTAAA----AGCTCAGCAGCTCTGGTATGCTATTATTGAATC 121994
Query 111056 ACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAA 111115
||| |||| || |||||||| || || ||||| || || ||| | ||||| ||
Sbjct 121995 CCAAATTGAGACCGGAACTCCGTACATGTTGTACAAGGACGCCTGTAACAGAAAATCCAA 122054
Query 111116 TCAAATGAATTTAGGAACAATTAA 111139
|| |||| ||||||| || ||
Sbjct 122055 CCAGCAGAATCTAGGAACCATCAA 122078
>seq891
Length=807508
Score = 91.5 bits (100), Expect = 3e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 131789 CCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAAT 131848
||||| | || || || ||||| ||||| | || |||||| | | | |||||
Sbjct 738237 CCTGCCGTGAAGAAAAAGGCAGACTGGGCCCTCAAGTGGATTAACGCGAAAAACGCTACA 738296
Query 131849 TTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTC 131908
|| | |||| || | |||||||| | ||||||||| || ||||| || ||| ||||
Sbjct 738297 TTCGCCGAAAGAATTATCGCTTTTGCCTCTGTTGAAGGAATCTTCTTCTCTGGTAGTTTC 738356
Query 131909 TGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAA 131968
|| || || ||| | |||||||| || ||||||||||||| |||| || ||
Sbjct 738357 GCCGCCATTTTCTGGTTGAAGAAGCGAGGTCTGATGCCTGGACTTACATTCAGTAACGAA 738416
Query 131969 TTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006
||||||| || || || | ||| || || || || ||
Sbjct 738417 CTCATCTCCAGGGACGAGGGATTACACACAGACTTCGC 738454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186707893536939
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |