Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4046 152 1e-31 seq891 91.5 3e-13 >seq4046 Length=337920 Score = 152 bits (168), Expect = 1e-31 Identities = 448/684 (65%), Gaps = 15/684 (2%) Strand=Plus/Plus Query 110465 TATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTG 110524 || ||| ||| |||| |||||||||||||| | ||| | || | | || || Sbjct 121401 TACTCACGCTTCTCCGACCCTATTTAACGCCGCTACTCCCCGTCCCCAGCTTTCATCCTG 121460 Query 110525 CTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC 110584 ||| ||||| || | |||||||| ||||||||||| ||| | | ||| | Sbjct 121461 CTTCCTTCTTACTATGGCCTCGGATTCTATCGAAGGTATTTACGATACCTTGAAACAGTG 121520 Query 110585 TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAA 110644 ||||| || || || | ||||| || || | | ||||| ||| || | | Sbjct 121521 CGCTCTAATCTCCAAGTCTGCCGGAGGGATCGGGCTCAATGTTCACTGTATCCGTGCTCA 121580 Query 110645 AGGAGCAAATATCGCAACAGCGAAGGGTGCTTC-AACTGGACTTG-TTCCAATGTTAAGA 110702 || || | || || | | || ||| || ||| || ||| |||| ||| | ||| Sbjct 121581 TGGGTCATACATTGCCGGAACCAACGGTCACTCTAACGGG--TTGATTCCTATGCTGAGA 121638 Query 110703 GTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTT 110759 || || || |||| || | |||||| |||| || || ||||||| ||| |||| Sbjct 121639 GTGTTTAATAACACAGCCAGATATGTTGATCAGGGAGGAAATAAGAGACCTGGAGCATTC 121698 Query 110760 GCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAAT 110819 |||||||| || ||||| |||||| |||||| || || ||||| || | || ||| Sbjct 121699 GCTATCTACCTTGAACCCTGGCATGGAGATATTTTCGAGTTCTTGGATTTGAAGAAGAAT 121758 Query 110820 CAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTA 110879 || || || || | ||||| | ||| | || || || ||||||||| | ||| | Sbjct 121759 CATGGTAAAGAGGAGAACAGAGCTAGGGATCTGTTCTACGCTATGTGGATTCCTGATCTC 121818 Query 110880 TTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCT 110939 |||||||| | || | | |||| ||| ||| ||||||||| | | || ||| Sbjct 121819 TTCATGAAGAGGGTAGAGGCTGATGGAGATTGGAGTCTAATGTGTCCTGACCAGTCCCCT 121878 Query 110940 GGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAA 110999 || || ||| || | ||| | ||||| || | || || || ||||||||||| ||| Sbjct 121879 GGACTTCATGAGGTTTGGGGAGACGAGTTCGAGGCTCTGTATGAGAAATATGAAAAGGAA 121938 Query 111000 GG-CAAGTTTCGCAAAC---AAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATC 111055 || | || | | | || ||| |||||| | || |||| || ||||||| Sbjct 121939 GGACGCGTCTTGAAGACTGTAAA----AGCTCAGCAGCTCTGGTATGCTATTATTGAATC 121994 Query 111056 ACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAA 111115 ||| |||| || |||||||| || || ||||| || || ||| | ||||| || Sbjct 121995 CCAAATTGAGACCGGAACTCCGTACATGTTGTACAAGGACGCCTGTAACAGAAAATCCAA 122054 Query 111116 TCAAATGAATTTAGGAACAATTAA 111139 || |||| ||||||| || || Sbjct 122055 CCAGCAGAATCTAGGAACCATCAA 122078 >seq891 Length=807508 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131789 CCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAAT 131848 ||||| | || || || ||||| ||||| | || |||||| | | | ||||| Sbjct 738237 CCTGCCGTGAAGAAAAAGGCAGACTGGGCCCTCAAGTGGATTAACGCGAAAAACGCTACA 738296 Query 131849 TTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTC 131908 || | |||| || | |||||||| | ||||||||| || ||||| || ||| |||| Sbjct 738297 TTCGCCGAAAGAATTATCGCTTTTGCCTCTGTTGAAGGAATCTTCTTCTCTGGTAGTTTC 738356 Query 131909 TGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAA 131968 || || || ||| | |||||||| || ||||||||||||| |||| || || Sbjct 738357 GCCGCCATTTTCTGGTTGAAGAAGCGAGGTCTGATGCCTGGACTTACATTCAGTAACGAA 738416 Query 131969 TTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 ||||||| || || || | ||| || || || || || Sbjct 738417 CTCATCTCCAGGGACGAGGGATTACACACAGACTTCGC 738454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186707893536939