Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6057 116 9e-21 seq4046 100 7e-16 seq1779 84.2 5e-11 >seq6057 Length=130802 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || ||||| |||| || || | |||| Sbjct 36906 CAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGCTAGTGAC 36847 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||| || || || ||||||||| || || || Sbjct 36846 AGCATTGAGAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAGCAG 36787 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||| ||||||||| |||| |||||||| ||| || |||||||||| | Sbjct 36786 AGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAATATT 36727 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || |||||||||||||||||| | || ||| || Sbjct 36726 CAGAAGGAATCTACTCTTCACCTTGTTCTCAGGCTTAGA 36688 Score = 107 bits (118), Expect = 5e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206258 TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317 |||| || || ||||||||| || || || ||| | |||||||| ||||||||| Sbjct 37049 TTCAGGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 36990 Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377 |||| |||||||| ||| || |||||||||| ||||||| || ||||||||||| || | Sbjct 36989 TGGAGGATGGAAGAACTCTGTCCGATTACAATATCCAGAAGGAATCTACTCTTCATCTGG 36930 Query 206378 TTTTGAGACTTCGA 206391 || | || ||| || Sbjct 36929 TTCTCAGGCTTAGA 36916 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206258 TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317 |||| || || ||||||||| || || || ||| | |||||||| ||||||||| Sbjct 39138 TTCAGGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 39079 Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377 |||| |||||||| ||| || | ||||| || | ||||| || |||||||||||||||| Sbjct 39078 TGGAGGATGGAAGAACTCTGTCGGATTATAATATTCAGAAGGAATCTACTCTTCACCTTG 39019 Query 206378 TTTTGAGACTTCGA 206391 || | || ||| || Sbjct 39018 TTCTCAGGCTTAGA 39005 Score = 100 bits (110), Expect = 7e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||| || | |||||||||||||||||| || ||||| | |||||| || | || ||| Sbjct 39005 TCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGACAGAGT 39064 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 |||||||| |||||||||||||| |||||||| Sbjct 39065 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGAT 39097 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206258 TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317 |||| || |||||||||||| || || || ||| | |||||||| ||||||||| Sbjct 37637 TTCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 37578 Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377 |||| |||||||| ||| || |||| ||||| | ||||| || || |||||||| || | Sbjct 37577 TGGAGGATGGAAGAACTCTGTCCGACTACAATATTCAGAAGGAATCAACTCTTCATCTGG 37518 Query 206378 TTTTGAGACTTCGA 206391 || | || ||| || Sbjct 37517 TTCTCAGGCTTAGA 37504 Score = 96.9 bits (106), Expect = 8e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||| || | |||||||||||||||||| || ||||| | ||| || || | || ||| Sbjct 36688 TCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGT 36747 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 |||||||| |||||||||||||| |||||||| Sbjct 36748 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGAT 36780 Score = 95.1 bits (104), Expect = 3e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 206260 CAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTG 206319 || || || ||||||||| || || || ||| | ||||| || ||||||||| || Sbjct 42363 CAGGACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGCTG 42304 Query 206320 GAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || |||||||| ||| || |||||||||| | ||||| || ||||||||||| || ||| Sbjct 42303 GAGGATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGGTT 42244 Query 206380 TTGAGACTTCGA 206391 | || ||| || Sbjct 42243 CTCAGGCTTAGA 42232 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||| || | ||| || ||||||||||| || ||||||| ||| || || | || ||| Sbjct 36916 TCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGT 36975 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 |||||||| |||||||||||||| |||||||| Sbjct 36976 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGAT 37008 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||| || | ||| || |||||||| || || ||||| | ||| ||||| | || ||| Sbjct 37504 TCTAAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGACAGAGT 37563 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 |||||||| |||||||||||||| |||||||| Sbjct 37564 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGAT 37596 >seq4046 Length=337920 Score = 100 bits (110), Expect = 7e-16 Identities = 131/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 173176 TGGGCTTTTACGGTAGTTCTCG-CTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTC 173234 || |||||||| || ||| | | | |||||| ||||| ||| ||||||| || | || Sbjct 121967 TGAGCTTTTACAGTC-TTCAAGACGCGTCCTTCCTTTTCATATTTCTCATACAGAGCCTC 121909 Query 173235 GAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCA 173294 ||| || | || ||| || | ||| || || | | | ||||| | |||||||| Sbjct 121908 GAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATTAGACTCCA 121849 Query 173295 ATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAACA 173353 || |||||| | ||| ||||||||||||||||| || | | |||| || |||||||||| Sbjct 121848 ATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTAGAACA 121790 >seq1779 Length=2408633 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 || || | |||||||||||| ||||| || ||||| | |||||| |||| | ||| ||| Sbjct 504828 AGCCTGAGAACAAGGTGAAGGGTAGATTCCTTCTGAATATTATAATCAGATAGAGTTCTT 504887 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 ||||| || |||||||| || |||||||| Sbjct 504888 CCATCCTCTAGCTGCTTGCCAGCGAAGAT 504916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181716334796979