Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 116 9e-21
seq4046 100 7e-16
seq1779 84.2 5e-11
>seq6057
Length=130802
Score = 116 bits (128), Expect = 9e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || | || ||||| || ||||| |||| || || | ||||
Sbjct 36906 CAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGCTAGTGAC 36847
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
| | || || ||| ||||| || || || ||||||||| || || ||
Sbjct 36846 AGCATTGAGAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAGCAG 36787
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||| | |||||||| ||||||||| |||| |||||||| ||| || |||||||||| |
Sbjct 36786 AGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAATATT 36727
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391
||||| || |||||||||||||||||| | || ||| ||
Sbjct 36726 CAGAAGGAATCTACTCTTCACCTTGTTCTCAGGCTTAGA 36688
Score = 107 bits (118), Expect = 5e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 206258 TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317
|||| || || ||||||||| || || || ||| | |||||||| |||||||||
Sbjct 37049 TTCAGGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 36990
Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377
|||| |||||||| ||| || |||||||||| ||||||| || ||||||||||| || |
Sbjct 36989 TGGAGGATGGAAGAACTCTGTCCGATTACAATATCCAGAAGGAATCTACTCTTCATCTGG 36930
Query 206378 TTTTGAGACTTCGA 206391
|| | || ||| ||
Sbjct 36929 TTCTCAGGCTTAGA 36916
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 206258 TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317
|||| || || ||||||||| || || || ||| | |||||||| |||||||||
Sbjct 39138 TTCAGGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 39079
Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377
|||| |||||||| ||| || | ||||| || | ||||| || ||||||||||||||||
Sbjct 39078 TGGAGGATGGAAGAACTCTGTCGGATTATAATATTCAGAAGGAATCTACTCTTCACCTTG 39019
Query 206378 TTTTGAGACTTCGA 206391
|| | || ||| ||
Sbjct 39018 TTCTCAGGCTTAGA 39005
Score = 100 bits (110), Expect = 7e-16
Identities = 78/93 (84%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810
|| ||| || | |||||||||||||||||| || ||||| | |||||| || | || |||
Sbjct 39005 TCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGACAGAGT 39064
Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843
|||||||| |||||||||||||| ||||||||
Sbjct 39065 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGAT 39097
Score = 98.7 bits (108), Expect = 2e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 206258 TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317
|||| || |||||||||||| || || || ||| | |||||||| |||||||||
Sbjct 37637 TTCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 37578
Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377
|||| |||||||| ||| || |||| ||||| | ||||| || || |||||||| || |
Sbjct 37577 TGGAGGATGGAAGAACTCTGTCCGACTACAATATTCAGAAGGAATCAACTCTTCATCTGG 37518
Query 206378 TTTTGAGACTTCGA 206391
|| | || ||| ||
Sbjct 37517 TTCTCAGGCTTAGA 37504
Score = 96.9 bits (106), Expect = 8e-15
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810
|| ||| || | |||||||||||||||||| || ||||| | ||| || || | || |||
Sbjct 36688 TCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGT 36747
Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843
|||||||| |||||||||||||| ||||||||
Sbjct 36748 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGAT 36780
Score = 95.1 bits (104), Expect = 3e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 206260 CAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTG 206319
|| || || ||||||||| || || || ||| | ||||| || ||||||||| ||
Sbjct 42363 CAGGACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGCTG 42304
Query 206320 GAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379
|| |||||||| ||| || |||||||||| | ||||| || ||||||||||| || |||
Sbjct 42303 GAGGATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGGTT 42244
Query 206380 TTGAGACTTCGA 206391
| || ||| ||
Sbjct 42243 CTCAGGCTTAGA 42232
Score = 91.5 bits (100), Expect = 3e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810
|| ||| || | ||| || ||||||||||| || ||||||| ||| || || | || |||
Sbjct 36916 TCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGT 36975
Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843
|||||||| |||||||||||||| ||||||||
Sbjct 36976 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGAT 37008
Score = 87.8 bits (96), Expect = 4e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810
|| ||| || | ||| || |||||||| || || ||||| | ||| ||||| | || |||
Sbjct 37504 TCTAAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGACAGAGT 37563
Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843
|||||||| |||||||||||||| ||||||||
Sbjct 37564 TCTTCCATCCTCCAGCTGCTTTCCAGCGAAGAT 37596
>seq4046
Length=337920
Score = 100 bits (110), Expect = 7e-16
Identities = 131/179 (73%), Gaps = 2/179 (1%)
Strand=Plus/Minus
Query 173176 TGGGCTTTTACGGTAGTTCTCG-CTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTC 173234
|| |||||||| || ||| | | | |||||| ||||| ||| ||||||| || | ||
Sbjct 121967 TGAGCTTTTACAGTC-TTCAAGACGCGTCCTTCCTTTTCATATTTCTCATACAGAGCCTC 121909
Query 173235 GAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCA 173294
||| || | || ||| || | ||| || || | | | ||||| | ||||||||
Sbjct 121908 GAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATTAGACTCCA 121849
Query 173295 ATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAACA 173353
|| |||||| | ||| ||||||||||||||||| || | | |||| || ||||||||||
Sbjct 121848 ATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTAGAACA 121790
>seq1779
Length=2408633
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814
|| || | |||||||||||| ||||| || ||||| | |||||| |||| | ||| |||
Sbjct 504828 AGCCTGAGAACAAGGTGAAGGGTAGATTCCTTCTGAATATTATAATCAGATAGAGTTCTT 504887
Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843
||||| || |||||||| || ||||||||
Sbjct 504888 CCATCCTCTAGCTGCTTGCCAGCGAAGAT 504916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181716334796979
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |