Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4046 161 9e-35 >seq4046 Length=337920 Score = 161 bits (178), Expect = 9e-35 Identities = 566/857 (66%), Gaps = 30/857 (4%) Strand=Plus/Minus Query 147172 TCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACG 147231 ||||||||||| || || ||||| ||||| || ||||| ||||||||||||||| | Sbjct 122441 TCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTTTAGAAGT 122382 Query 147232 GTCGCTTC-TTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTG 147290 | ||||| || | | ||| | || | | || || | | ||||| |||| ||||| Sbjct 122381 TTAGCTTCGTTAGAT-TCGAATGGGAATCTCATGAGAATGTACGCATCAGCCAGGCCCTG 122323 Query 147291 GATACCGACGCCGATAGGTC---GATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTAT-GG 147346 ||||| | || || |||| || || | |||||| | || ||| || || Sbjct 122322 AATACCAATACCAATTGGTCTGTGACGCAT---GTTGCTTTTCCGTGC-CTCCTTAACGG 122267 Query 147347 GATAGTGGTTGCGATCAATAATCTTGTTGAGGTTAC-GCACTACAACTTTAGTTATTGTT 147405 |||||| || || ||||| ||||||||||| | ||| |||| || | || | Sbjct 122266 GATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGG-CAACCTTGGATACCTTC 122208 Query 147406 TTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGA-CACGTACGCATTGGTTCACGGCGAT 147464 || || |||||||| ||||| ||| ||| | |||| || || ||| ||||| || Sbjct 122207 TTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAAC--AT--GTTGACGGCAAT 122152 Query 147465 AGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCA 147524 || || || |||||||||||| ||| || | | || ||| | |||||||| | ||| Sbjct 122151 GGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCA 122092 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 ||| || |||||| ||| ||| | ||| ||||| ||| ||| | || || ||||| Sbjct 122091 CAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGCGTC 122032 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCA 147643 ||| | | ||||||||| |||||||| | ||| | ||||| || | | || | Sbjct 122031 CTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAAT-AGCATACCAGA 121973 Query 147644 GGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACC 147703 | | ||| ||| || || | ||| || || ||||| || ||| |||| Sbjct 121972 GCTGCTGAGCTTTTACAGTCTTCAAGACGCGTCCTTCCTTTTCATATTTCTCATACAGAG 121913 Query 147704 GCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCG 147763 ||| |||||||| || | || ||| || || |||| | |||||||| || Sbjct 121912 CCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATTAGAC 121853 Query 147764 ACCACATGT-CGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTAC 147822 ||| || | | || || | || | ||| || ||||| || | ||||| ||||| Sbjct 121852 TCCA-ATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTAG 121794 Query 147823 ATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGT-TTCAAAT-TAAGCACGC 147880 | ||||| | ||| || ||||| ||||| | | | ||||||| ||| || | Sbjct 121793 AACAGATCCCTAGCTCTGTTCTCCTC-TTTACCATGATTCTTCTTCAAATCCAAGAACTC 121735 Query 147881 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTC 147937 | | || || | ||||||||||||| ||||| || | || || | | |||| Sbjct 121734 GA-AAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTATTTC 121676 Query 147938 CGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGC 147997 | ||||| || |||| | | |||| |||||||| | || ||| || || ||| Sbjct 121675 CTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACCCGT 121616 Query 147998 TCGCAGTG-CCGTTGGT 148013 | | |||| |||||||| Sbjct 121615 TAG-AGTGACCGTTGGT 121600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476570098241640