Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 161 9e-35
>seq4046
Length=337920
Score = 161 bits (178), Expect = 9e-35
Identities = 566/857 (66%), Gaps = 30/857 (4%)
Strand=Plus/Minus
Query 147172 TCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACG 147231
||||||||||| || || ||||| ||||| || ||||| ||||||||||||||| |
Sbjct 122441 TCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTTTAGAAGT 122382
Query 147232 GTCGCTTC-TTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTG 147290
| ||||| || | | ||| | || | | || || | | ||||| |||| |||||
Sbjct 122381 TTAGCTTCGTTAGAT-TCGAATGGGAATCTCATGAGAATGTACGCATCAGCCAGGCCCTG 122323
Query 147291 GATACCGACGCCGATAGGTC---GATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTAT-GG 147346
||||| | || || |||| || || | |||||| | || ||| || ||
Sbjct 122322 AATACCAATACCAATTGGTCTGTGACGCAT---GTTGCTTTTCCGTGC-CTCCTTAACGG 122267
Query 147347 GATAGTGGTTGCGATCAATAATCTTGTTGAGGTTAC-GCACTACAACTTTAGTTATTGTT 147405
|||||| || || ||||| ||||||||||| | ||| |||| || | || |
Sbjct 122266 GATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGG-CAACCTTGGATACCTTC 122208
Query 147406 TTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGA-CACGTACGCATTGGTTCACGGCGAT 147464
|| || |||||||| ||||| ||| ||| | |||| || || ||| ||||| ||
Sbjct 122207 TTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAAC--AT--GTTGACGGCAAT 122152
Query 147465 AGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCA 147524
|| || || |||||||||||| ||| || | | || ||| | |||||||| | |||
Sbjct 122151 GGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCA 122092
Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584
||| || |||||| ||| ||| | ||| ||||| ||| ||| | || || |||||
Sbjct 122091 CAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGCGTC 122032
Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCA 147643
||| | | ||||||||| |||||||| | ||| | ||||| || | | || |
Sbjct 122031 CTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAAT-AGCATACCAGA 121973
Query 147644 GGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACC 147703
| | ||| ||| || || | ||| || || ||||| || ||| ||||
Sbjct 121972 GCTGCTGAGCTTTTACAGTCTTCAAGACGCGTCCTTCCTTTTCATATTTCTCATACAGAG 121913
Query 147704 GCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCG 147763
||| |||||||| || | || ||| || || |||| | |||||||| ||
Sbjct 121912 CCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATTAGAC 121853
Query 147764 ACCACATGT-CGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTAC 147822
||| || | | || || | || | ||| || ||||| || | ||||| |||||
Sbjct 121852 TCCA-ATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTAG 121794
Query 147823 ATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGT-TTCAAAT-TAAGCACGC 147880
| ||||| | ||| || ||||| ||||| | | | ||||||| ||| || |
Sbjct 121793 AACAGATCCCTAGCTCTGTTCTCCTC-TTTACCATGATTCTTCTTCAAATCCAAGAACTC 121735
Query 147881 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTC 147937
| | || || | ||||||||||||| ||||| || | || || | | ||||
Sbjct 121734 GA-AAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTATTTC 121676
Query 147938 CGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGC 147997
| ||||| || |||| | | |||| |||||||| | || ||| || || |||
Sbjct 121675 CTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACCCGT 121616
Query 147998 TCGCAGTG-CCGTTGGT 148013
| | |||| ||||||||
Sbjct 121615 TAG-AGTGACCGTTGGT 121600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476570098241640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |