Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq5445 87.8 6e-14 seq86 82.4 2e-12 seq5379 78.8 3e-11 >seq5445 Length=1386597 Score = 87.8 bits (96), Expect = 6e-14 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| | Sbjct 309935 GGCTGTGATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCGAT 309876 Query 2828 CCCGGG 2833 |||||| Sbjct 309875 CCCGGG 309870 >seq86 Length=19873 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||| |||||||||| |||||||||||||||||||||||| ||||| | |||||| Sbjct 7035 TAGCTCAATTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCGATCCCGGG 6978 >seq5379 Length=194593 Score = 78.8 bits (86), Expect = 3e-11 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| | | |||||||||||||||||| |||||||||||||||||||||||| |||| | Sbjct 119368 GGCCGTAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCAGTTCGAT 119427 Query 2828 CCCGGG 2833 || ||| Sbjct 119428 CCTGGG 119433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848404023855