Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2557 122 1e-21
>seq2557
Length=1824507
Score = 122 bits (134), Expect = 1e-21
Identities = 167/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
||||||||||| ||||||||||| ||||| |||| | ||| ||| |||| ||
Sbjct 1621113 ATCTACAAGGTCCTCAAGCAGGTCCACCCTGACACCGGT-----ATC-TCCTCCAAGGCC 1621060
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||||| ||||||||||| || || | | |||| |||| ||
Sbjct 1621059 ATGAGCATCATGAACTCCTTTGTCAACGATATCTTCTCCAGGATCGCTGCCGAAGCTTCC 1621000
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| |||| | || ||||||| | ||| ||| | | || |||||||||||| | ||
Sbjct 1620999 CGATTGGCCCACTACAACAAGAGATCCACCATCACCTCCCGGGAGATCCAGACCTCTGTC 1620940
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| || || | | ||| ||| |||||| |||||||||||| ||||| ||||
Sbjct 1620939 AGGCTCCTCCTTCCCGGAGAATTGGCCAAGCACGCCGTCTCTGAGGGAACCA 1620888
Score = 122 bits (134), Expect = 1e-21
Identities = 167/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
||||||||||| ||||||||||| ||||| |||| | ||| ||| |||| ||
Sbjct 1641073 ATCTACAAGGTCCTCAAGCAGGTCCACCCTGACACCGGT-----ATC-TCCTCCAAGGCC 1641126
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||||| ||||||||||| || || | | |||| |||| ||
Sbjct 1641127 ATGAGCATCATGAACTCCTTTGTCAACGATATCTTCTCCAGGATCGCTGCCGAAGCTTCC 1641186
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| ||||| | || ||||||| | ||| ||| | | || |||||||||||| | ||
Sbjct 1641187 CGACTGGCCCACTACAACAAGAGATCCACCATCACCTCCCGGGAGATCCAGACCTCTGTC 1641246
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| || || | | ||| || |||||| |||||||||||| ||||| ||||
Sbjct 1641247 AGGCTCCTCCTTCCCGGAGAGTTGGCCAAGCACGCCGTCTCTGAGGGAACCA 1641298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177145778769638
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |