Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2557 122 1e-21 >seq2557 Length=1824507 Score = 122 bits (134), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| ||||||||||| ||||| |||| | ||| ||| |||| || Sbjct 1621113 ATCTACAAGGTCCTCAAGCAGGTCCACCCTGACACCGGT-----ATC-TCCTCCAAGGCC 1621060 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| ||||||||||| || || | | |||| |||| || Sbjct 1621059 ATGAGCATCATGAACTCCTTTGTCAACGATATCTTCTCCAGGATCGCTGCCGAAGCTTCC 1621000 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | || ||||||| | ||| ||| | | || |||||||||||| | || Sbjct 1620999 CGATTGGCCCACTACAACAAGAGATCCACCATCACCTCCCGGGAGATCCAGACCTCTGTC 1620940 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || | | ||| ||| |||||| |||||||||||| ||||| |||| Sbjct 1620939 AGGCTCCTCCTTCCCGGAGAATTGGCCAAGCACGCCGTCTCTGAGGGAACCA 1620888 Score = 122 bits (134), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| ||||||||||| ||||| |||| | ||| ||| |||| || Sbjct 1641073 ATCTACAAGGTCCTCAAGCAGGTCCACCCTGACACCGGT-----ATC-TCCTCCAAGGCC 1641126 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| ||||||||||| || || | | |||| |||| || Sbjct 1641127 ATGAGCATCATGAACTCCTTTGTCAACGATATCTTCTCCAGGATCGCTGCCGAAGCTTCC 1641186 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || ||||||| | ||| ||| | | || |||||||||||| | || Sbjct 1641187 CGACTGGCCCACTACAACAAGAGATCCACCATCACCTCCCGGGAGATCCAGACCTCTGTC 1641246 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || | | ||| || |||||| |||||||||||| ||||| |||| Sbjct 1641247 AGGCTCCTCCTTCCCGGAGAGTTGGCCAAGCACGCCGTCTCTGAGGGAACCA 1641298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177145778769638