Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4046 434 1e-116 seq891 120 4e-22 >seq4046 Length=337920 Score = 434 bits (480), Expect = 1e-116 Identities = 1009/1506 (67%), Gaps = 19/1506 (1%) Strand=Plus/Minus Query 68746 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTT 68805 ||||| || |||||||| || | ||||| || || || |||||||| |||||||| Sbjct 122684 GTGTAGATGTTACTGGTGTAGGCCTCCACGCTCTCGTTGTTGCCCAGAATCTGAGCAGTG 122625 Query 68806 GATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTA 68865 || || ||||||||||| |||| | | | || || | |||||| || || | Sbjct 122624 GAAGCTGTTGGCATAGGAGCCAGGAGCAGAGAGTTCCTTACACCATGCTTTGCAATCTGG 122565 Query 68866 TCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGT 68925 | || || | |||||| || |||| ||| || ||| | ||| ||||| Sbjct 122564 GCCTTCAGCTTAGCCCAATCATGGAGCTCAGTGGGTGTTACTCCCCACATATCATATTGC 122505 Query 68926 AGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCT 68985 || | || | ||| | || ||| ||| |||||||||| || || || || Sbjct 122504 AGCCTACCCTGACTAACCGGAGAACCAGGATAGGTTTCATAAGTACCCAATTGCTCGGCA 122445 Query 68986 AGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGA 69045 || ||||| ||||| || | || ||||| ||||| ||||| || || | || || ||| Sbjct 122444 AGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTTTAGA 122385 Query 69046 TCTTGTGCTTC--TAGACTATCGAATGGATAATGTAAA-AGAATAAATGCATCTGCCAAT 69102 || ||||| |||| | ||||||| ||| | | ||||| | ||||| |||| Sbjct 122384 AGTTTAGCTTCGTTAGATT--CGAATGGG-AATCTCATGAGAATGTACGCATCAGCCAGG 122328 Query 69103 CCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCA-GCTTCTGGAAT 69161 ||||||| |||||||| || ||||| || | | | || | || | || || || Sbjct 122327 CCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCTCCTTAAC 122269 Query 69162 AGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTC 69221 ||||| ||||||| || |||||||| || || |||| | | || || || | Sbjct 122268 GGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGGATACCTT 122209 Query 69222 CTTTAGTTTGAGAAAATCAAA--TCGTC-CATCTATAACAAACATATTCAGTGCTACAGA 69278 ||| || || || ||| | || | || | || ||||| || | || | || Sbjct 122208 CTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGGCAATGGA 122149 Query 69279 TGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAG 69338 ||||| || || || || ||||||| || | |||| | || ||||| || || Sbjct 122148 GGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCACAG 122089 Query 69339 ATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTT 69398 ||| |||||||| || || ||||| ||||| || ||| |||||||||||||||| Sbjct 122088 ATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGCGTCCTT 122029 Query 69399 GTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGAC 69458 ||| | || ||||||| || || ||||| || ||||| ||||||| | ||| | Sbjct 122028 GTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACCAGAGCTG 121969 Query 69459 CCTAGCATTTATTACGGTCTTGTA-ACGCTTC--TCTTTTTCATATTGTGTATATAGCCG 69515 | ||| |||| | ||||| | |||| || || |||||||||| ||| || Sbjct 121968 CTGAGCTTTTA---CAGTCTTCAAGACGCGTCCTTCCTTTTCATATTTCTCATACAGAGC 121912 Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||||| || ||||||||||| |||| | |||||| | | | |||||||| | Sbjct 121911 CTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATTAGACT 121852 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| | ||||| ||| || | ||||| || ||||| |||||||| | ||| || Sbjct 121851 CCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTAGAA 121792 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 ||||| || | ||| || || || || || ||| || || | ||| | ||||| | Sbjct 121791 CAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCAAGAACTCGAA 121732 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 |||||| |||||| ||||| || || || || | |||| |||| ||||||||||| Sbjct 121731 AATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTATTTCCTCC 121672 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 |||||| | |||||||| ||||||||| | ||||||||||| ||||| | || ||||| Sbjct 121671 CTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACCCGTTAGA 121612 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACC 69875 | ||| || ||||| | ||| || || || || ||| || | || || Sbjct 121611 GTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAACATTGAGCCC 121552 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 || ||||| || || ||||||||||| || ||||||| || || || ||||| || Sbjct 121551 GATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATCGTAAATACCTTC 121492 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 || ||| ||| ||||||| || ||| || | || || | ||| | Sbjct 121491 GATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGGACGGGGAGTAGC 121432 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 || ||||||| || ||||| |||||||| ||| | | | ||||| |||| ||| || Sbjct 121431 GGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAGAAGATCGTAGGT 121372 Query 70056 TTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 |||||| || || || |||||| | | | || ||||||| || || | ||||||||| | Sbjct 121371 TTCAATGGCAGAGTCAATATCCTCTCCG-TGGATTCCTACAGCAACTCTCATCAACATCT 121313 Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174 |||| |||| || ||| || || || || |||| ||||| || || || | Sbjct 121312 GCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACGCTCTAGGGTCT 121253 Query 70175 TAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTAT 70234 ||||||| ||||| | |||| || || | |||||||| || ||| | || || Sbjct 121252 TAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGATGGCAGCGTCAAGACGAT 121193 Query 70235 CCTTAT 70240 |||||| Sbjct 121192 CCTTAT 121187 >seq891 Length=807508 Score = 120 bits (132), Expect = 4e-22 Identities = 182/257 (71%), Gaps = 9/257 (4%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| |||||||||||||| |||| ||||| || || || | ||||||| Sbjct 738466 AACAGCAAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGATGAGTTCGTTACTG 738407 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 ||||| ||||||||||| ||||| ||||| || | ||| || ||||| || ||| ||| Sbjct 738406 AATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCGGCGAAACTACCA 738347 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || |||||||| ||||| || | ||||| || | || ||| || || | |||| | Sbjct 738346 GAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCGAA---TGTAGCG 738290 Query 39788 TTAT----GT--ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTT 39841 || | || |||||||| | ||||| || || || ||||| || ||| || ||| Sbjct 738289 TTTTTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCACGGCAGGGATGGTT 738230 Query 39842 TCTATAGCATTAAAGAG 39858 || ||||| || || || Sbjct 738229 TCGATAGCGTTGAACAG 738213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686849562702360