Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq891 100 2e-16 >seq891 Length=807508 Score = 100 bits (110), Expect = 2e-16 Identities = 135/185 (73%), Gaps = 5/185 (3%) Strand=Plus/Plus Query 44040 TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAAT 44099 |||| || || || ||||| | ||||| | || | || |||||||||||||| || | Sbjct 738214 TGTTCAACGCTATCGAAACCATCCCTGCCGTGAAGAAAAAGGCAGACTGGGCCCTCAAGT 738273 Query 44100 GGATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156 |||| || | ||| | | | || | ||| || || |||| ||||| ||| |||| Sbjct 738274 GGATTAACGCGAAAAACGCTACATTCGCCGAAAGAATTATCGCTTTTGCCTCTGTTGAAG 738333 Query 44157 GCATTTTCTTTTCAGGATCGTTT-GCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATG 44215 | || ||||| || || | |||| || ||||| || ||||| ||||| |||||| ||||| Sbjct 738334 GAATCTTCTTCTCTGG-TAGTTTCGCCGCCATTTTCTGGTTGAAGAAGCGAGGTCTGATG 738392 Query 44216 CCTGG 44220 ||||| Sbjct 738393 CCTGG 738397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397422581278495