Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4046 125 6e-24 >seq4046 Length=337920 Score = 125 bits (138), Expect = 6e-24 Identities = 602/940 (64%), Gaps = 44/940 (5%) Strand=Plus/Minus Query 131041 GCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGC 131100 ||| ||||||| ||||||||| ||||| ||||| |||||||| |||| |||| || Sbjct 122436 GCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTTTAGAAGTTTAGC 122377 Query 131101 TTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCC 131160 || ||| ||| | || ||| |||| | ||| | || || || || ||||| || || Sbjct 122376 TTCGTTAGATTCGAATGGGAATCTCATGAGAATGTACGCATCAGCCAGGCCCTGAATACC 122317 Query 131161 AACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGTGGGATAAAGGTT 131220 || || | ||||| || | || | ||| || | | |||||| || Sbjct 122316 AATACCAATTGGTCTGTGACGCATGTTGCTTTTCCGTGCCTCCTTAACGGGATAGTAATT 122257 Query 131221 AATGTCAATTATTTTGTTTAAATTGC-GCACTACAATTTGTGTGACGCTTTTCAATTTGT 131279 || ||| || |||||||| | || | ||| | ||| | || | |||| || | Sbjct 122256 AACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGGAT-ACCTTCTTCAGCTTCT 122198 Query 131280 CGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGAT 131339 |||| ||| | || | || |||| || || || || || || || || | Sbjct 122197 CGAAGTCATAGGTCT---TGTCAGGGTTCACGAACATGTTGACGGCAATGGAGGCTAGGT 122141 Query 131340 TACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGC 131399 | || || ||| || ||| || | || | || ||||| | ||||| ||| || Sbjct 122140 TGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCACAGATTTGAGC 122081 Query 131400 TCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATC 131458 || ||||| || | ||| || || ||| ||| || ||| | ||||||||||| | Sbjct 122080 ATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTT-ACAGGCGTCCTTGTACAAC 122022 Query 131459 ATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAAT-GTATCGAAAGAGTTTTCGAGC 131517 ||||| || || || || || | ||| | ||||||||| | || | ||| | |||| Sbjct 122021 ATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACCA-GAGCTGCTGAGC 121963 Query 131518 AGACAATTGATATTTGTATTG--GCCGCGT------TTTTCGTAATTTTCGTACAACGTT 131569 || | | || || | ||||| ||||| || || || |||| | Sbjct 121962 T-----TTTACA---GTCTTCAAGACGCGTCCTTCCTTTTCATATTTCTCATACAGAGCC 121911 Query 131570 TCAAAGT--TTTGGCCAAAC-----GAACTGTCCAAATTGGGACATTCGCTGGGACACAT 131622 || || | | | |||||| ||| ||||| ||||| | | |||||||| Sbjct 121910 TCGAACTCGTCTCCCCAAACCTCATGAA--GTCCAG---GGGAC--TGGTCAGGACACAT 121858 Query 131623 TAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGC 131682 ||| ||| | || | || || | |||||| || | ||| || | ||| | || Sbjct 121857 TAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGC 121798 Query 131683 GTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtt-tttttCAAATTTAAAA 131741 ||| |||||||| |||||| | ||||| ||| || |||| ||| || ||||||| || | Sbjct 121797 GTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTA-CCATGATTCTTCTTCAAATCCAAGA 121739 Query 131742 AGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA- 131800 | || ||||| || ||||||||||||| | || | || | ||| || | |||| Sbjct 121738 ACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTAT 121679 Query 131801 --CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAAC 131858 || || |||| ||||| | | |||| || | || | || ||| || ||| | Sbjct 121678 TTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACC 121619 Query 131859 CGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGT 131918 |||| | || || ||||| | |||||| |||| || | ||| |||||| | Sbjct 121618 CGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAACAT 121559 Query 131919 TGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958 |||| || || |||||| | | || |||||||| ||||| Sbjct 121558 TGAGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCA 121519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424898670851688