Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 125 6e-24
>seq4046
Length=337920
Score = 125 bits (138), Expect = 6e-24
Identities = 602/940 (64%), Gaps = 44/940 (5%)
Strand=Plus/Minus
Query 131041 GCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGC 131100
||| ||||||| ||||||||| ||||| ||||| |||||||| |||| |||| ||
Sbjct 122436 GCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTTTAGAAGTTTAGC 122377
Query 131101 TTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCC 131160
|| ||| ||| | || ||| |||| | ||| | || || || || ||||| || ||
Sbjct 122376 TTCGTTAGATTCGAATGGGAATCTCATGAGAATGTACGCATCAGCCAGGCCCTGAATACC 122317
Query 131161 AACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGTGGGATAAAGGTT 131220
|| || | ||||| || | || | ||| || | | |||||| ||
Sbjct 122316 AATACCAATTGGTCTGTGACGCATGTTGCTTTTCCGTGCCTCCTTAACGGGATAGTAATT 122257
Query 131221 AATGTCAATTATTTTGTTTAAATTGC-GCACTACAATTTGTGTGACGCTTTTCAATTTGT 131279
|| ||| || |||||||| | || | ||| | ||| | || | |||| || |
Sbjct 122256 AACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGGAT-ACCTTCTTCAGCTTCT 122198
Query 131280 CGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGAT 131339
|||| ||| | || | || |||| || || || || || || || || |
Sbjct 122197 CGAAGTCATAGGTCT---TGTCAGGGTTCACGAACATGTTGACGGCAATGGAGGCTAGGT 122141
Query 131340 TACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGC 131399
| || || ||| || ||| || | || | || ||||| | ||||| ||| ||
Sbjct 122140 TGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCACAGATTTGAGC 122081
Query 131400 TCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATC 131458
|| ||||| || | ||| || || ||| ||| || ||| | ||||||||||| |
Sbjct 122080 ATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTT-ACAGGCGTCCTTGTACAAC 122022
Query 131459 ATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAAT-GTATCGAAAGAGTTTTCGAGC 131517
||||| || || || || || | ||| | ||||||||| | || | ||| | ||||
Sbjct 122021 ATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACCA-GAGCTGCTGAGC 121963
Query 131518 AGACAATTGATATTTGTATTG--GCCGCGT------TTTTCGTAATTTTCGTACAACGTT 131569
|| | | || || | ||||| ||||| || || || |||| |
Sbjct 121962 T-----TTTACA---GTCTTCAAGACGCGTCCTTCCTTTTCATATTTCTCATACAGAGCC 121911
Query 131570 TCAAAGT--TTTGGCCAAAC-----GAACTGTCCAAATTGGGACATTCGCTGGGACACAT 131622
|| || | | | |||||| ||| ||||| ||||| | | ||||||||
Sbjct 121910 TCGAACTCGTCTCCCCAAACCTCATGAA--GTCCAG---GGGAC--TGGTCAGGACACAT 121858
Query 131623 TAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGC 131682
||| ||| | || | || || | |||||| || | ||| || | ||| | ||
Sbjct 121857 TAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGC 121798
Query 131683 GTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtt-tttttCAAATTTAAAA 131741
||| |||||||| |||||| | ||||| ||| || |||| ||| || ||||||| || |
Sbjct 121797 GTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTA-CCATGATTCTTCTTCAAATCCAAGA 121739
Query 131742 AGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA- 131800
| || ||||| || ||||||||||||| | || | || | ||| || | ||||
Sbjct 121738 ACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTAT 121679
Query 131801 --CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAAC 131858
|| || |||| ||||| | | |||| || | || | || ||| || ||| |
Sbjct 121678 TTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACC 121619
Query 131859 CGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGT 131918
|||| | || || ||||| | |||||| |||| || | ||| |||||| |
Sbjct 121618 CGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAACAT 121559
Query 131919 TGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958
|||| || || |||||| | | || |||||||| |||||
Sbjct 121558 TGAGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCA 121519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424898670851688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |