Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 226 3e-54
seq891 96.9 4e-15
>seq4046
Length=337920
Score = 226 bits (250), Expect = 3e-54
Identities = 906/1405 (64%), Gaps = 36/1405 (3%)
Strand=Plus/Plus
Query 104211 TGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA 104270
|| |||| | || ||| | ||||| ||| | || || | || || || || || || |
Sbjct 121295 TGGTGGAGAGACCCCAGCAGATGTTGATGAGAGTTGCTGTAGGAATCCACGGAGAGGATA 121354
Query 104271 TTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACAC 104330
|||| |||| | | || || ||||| | || || | |||| | |||||| | |
Sbjct 121355 TTGACTCTGCCATTGAAACCTACGATCTTCTTTCGCAGAGACTGTTTACTCACGCTTCTC 121414
Query 104331 CAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCA 104390
| ||||| || || || | ||| || | ||||| | || ||||||||| | | |
Sbjct 121415 CGACCCTATTTAACGCCGCTACTCCCCGTCCCCAGCTTTCATCCTGCTTCCTTCTTACTA 121474
Query 104391 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAA 104450
||| || ||| | ||||| || | || | | |||| || | |||||| |
Sbjct 121475 TGGCCTCGGATTCTATCGAAGGTATTTACGATACCTTGAAACAGTGCGCTCTAATCTCCA 121534
Query 104451 AGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTC 104510
||| || || || || ||| | | | || | | | || || || |||
Sbjct 121535 AGTCTGCCGGAGGGATCGGGCTCAATGTTCACTGTATCCGTGCTCATGGGTCATACATTG 121594
Query 104511 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 104570
|| || || ||||| || | || | ||||| ||||| | || ||||| |||||
Sbjct 121595 CCGGAACCAACGGTCACTCTAACGGGTTGATTCCTATGCTGAGAGTGTTTAATAACACAG 121654
Query 104571 CGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGC 104627
| | ||||| |||| | || | || ||| | |||| |||| ||||| |
Sbjct 121655 CCAGATATGTTGATCAGGGAGGAAATAAGAGACCTGGAGCATTCGCTATCTACCTTGAAC 121714
Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687
| ||||| | ||||| | |||||| | || ||| || || ||| | ||||||
Sbjct 121715 CCTGGCATGGAGATATTTTCGAGTTCTTGGATTTGAAGAAGAATCATGGTAAAGAGGAGA 121774
Query 104688 CGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 104746
| | || | ||||| |||| |||| | |||||||| ||||||||||||||||| ||
Sbjct 121775 A-CAGAGCTAGGGATCTGTTCTACGCTATGTGGATTCCTGATCTCTTCATGAAGAGGGTA 121833
Query 104747 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCC 104806
|||| ||| ||||| ||| | ||||| ||| || | ||||| || || |||
Sbjct 121834 GAGGCTGATGGAGATTGGAGTCTAATGTGTCCTGACCAGTCCCCTGGACT-TC--ATGAG 121890
Query 104807 GT---GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACT 104863
|| ||| || ||||| || || || || || || || | ||||| || || ||
Sbjct 121891 GTTTGGGGAGACGAGTTCGAGGCTCTGTATGAGAAATATGAAAAGGAAGGACG--CGTCT 121948
Query 104864 GC--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921
||| || |||| | | ||| | |||||| | | || |||| ||||| |
Sbjct 121949 TGAAGACTGTAAAAGCTCAGCAGCTCTGGTATGCTATTATTGAATCCCAAATTGAGACCG 122008
Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981
| || || |||||| | ||||| |||||||||||| ||| || || ||||| | |
Sbjct 122009 GAACTCCGTACATGTTGTACAAGGACGCCTGTAACAGAAAATCCAACCAGCAGAATCTAG 122068
Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 105041
| ||||| | || ||||| || ||||||||| | |||| | | | ||||||
Sbjct 122069 GAACCATCAAATGCTCAAATCTGTGCACAGAAATCGTCGAATACTCCGCCCCTGATGAGG 122128
Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 105101
||| || || ||||| || || || || || || || ||| | || || ||||
Sbjct 122129 TGGCCGTCTGCAACCTAGCCTCCATTGCCGTCAACATGTTCGTGAACCCTGA---CAAGA 122185
Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTA-CGAAAACTGTCACCAAAAACCTAAACAGA 105160
| | ||| | || || || | |||| || | || || | || |||||| |||| |
Sbjct 122186 CCTATGACTTCGAGAAGCT-GAAGAAGGTATCCAAGGTTGCCTGCAGAAACCTCAACAAA 122244
Query 105161 GTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220
|||| || |||| || |||||| || || || ||| || ||| | ||| |
Sbjct 122245 ATTATCGACGTTAATTACTATCCCGTTAAGGAGGCACGGAAAAGCAACATGCGTCACAGA 122304
Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 105280
||||||||| | ||| ||||||| || || |||| | |||||| | | ||||
Sbjct 122305 CCAATTGGTATTGGTATTCAGGGCCTGGCTGATGCGTACATTCTCATGAGATTCCCATTC 122364
Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340
|| || ||||||| || | || | || ||||| || || || ||| |||
Sbjct 122365 GAATCTAACGAAGCTAAACTTCTAAACAAACAAATCTTTGAAACTATTTACTACGGAGCT 122424
Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAG--GTTGATGGTCCATATGAAACCTTTGAGGGTT 105398
|| || || || | ||| | || ||| ||| ||| | |||||||||| | ||||
Sbjct 122425 CTGGAAGCAAGCTGTGAGCTTGCCGAGCAATTG--GGTACTTATGAAACCTATCCTGGTT 122482
Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCA 105456
|||| | | || || ||| |||| ||||||||||| | || | ||| | || |
Sbjct 122483 CTCCGGTTAGTCAGGGTAGGCTGCAATATGATATGTGGGGA-GTAACACCCA-CTGAGCT 122540
Query 105457 CTACGACTGGG--AAGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTC 105512
| | || |||| ||| || |||| | || ||| || | ||| | | ||| ||
Sbjct 122541 CCATGATTGGGCTAAG--CTGAAGGCCCAGATTGCAA--AGCATGGTGTAAGGAACTCTC 122596
Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 105572
| ||| ||||||| ||||||||||| ||||| || || || |||| || || || ||
Sbjct 122597 TGCTCCTGGCTCCTATGCCAACAGCTTCCACTGCTCAGATTCTGGGCAACAACGAGAGCG 122656
Query 105573 TTGAACCCTACACGACGAACATCTA 105597
| || ||||||| | ||||||||
Sbjct 122657 TGGAGGCCTACACCAGTAACATCTA 122681
>seq891
Length=807508
Score = 96.9 bits (106), Expect = 4e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTCGCGTTCCTTTGCTGAGCG 94808
|| || || || ||||| | |||||| || | | ||| ||| | | || || || |
Sbjct 738249 AAAAAGGCAGACTGGGCCCTCAAGTGGATTAACGCGAAAAACGC-TACATTCGCCGAAAG 738307
Query 94809 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 94868
| | |||| ||||| | |||||| || ||||||||||||||| ||| ||| ||||
Sbjct 738308 AATTATCGCTTTTGCCTCTGTTGAAGGAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTT 738367
Query 94869 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 94928
||| | |||||||||||||| ||||| || || ||| ||||| || ||||| |
Sbjct 738368 CTGGTTGAAGAAGCGAGGTCTGATGCCTGGACTTACATTCAGTAACGAACTCATCTCCAG 738427
Query 94929 TGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||||| | ||| ||| || ||
Sbjct 738428 GGACGAGGGATTACACACAGACTTCGC 738454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583210501046760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |