Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4046 226 3e-54 seq891 96.9 4e-15 >seq4046 Length=337920 Score = 226 bits (250), Expect = 3e-54 Identities = 906/1405 (64%), Gaps = 36/1405 (3%) Strand=Plus/Plus Query 104211 TGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA 104270 || |||| | || ||| | ||||| ||| | || || | || || || || || || | Sbjct 121295 TGGTGGAGAGACCCCAGCAGATGTTGATGAGAGTTGCTGTAGGAATCCACGGAGAGGATA 121354 Query 104271 TTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACAC 104330 |||| |||| | | || || ||||| | || || | |||| | |||||| | | Sbjct 121355 TTGACTCTGCCATTGAAACCTACGATCTTCTTTCGCAGAGACTGTTTACTCACGCTTCTC 121414 Query 104331 CAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCA 104390 | ||||| || || || | ||| || | ||||| | || ||||||||| | | | Sbjct 121415 CGACCCTATTTAACGCCGCTACTCCCCGTCCCCAGCTTTCATCCTGCTTCCTTCTTACTA 121474 Query 104391 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAA 104450 ||| || ||| | ||||| || | || | | |||| || | |||||| | Sbjct 121475 TGGCCTCGGATTCTATCGAAGGTATTTACGATACCTTGAAACAGTGCGCTCTAATCTCCA 121534 Query 104451 AGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTC 104510 ||| || || || || ||| | | | || | | | || || || ||| Sbjct 121535 AGTCTGCCGGAGGGATCGGGCTCAATGTTCACTGTATCCGTGCTCATGGGTCATACATTG 121594 Query 104511 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 104570 || || || ||||| || | || | ||||| ||||| | || ||||| ||||| Sbjct 121595 CCGGAACCAACGGTCACTCTAACGGGTTGATTCCTATGCTGAGAGTGTTTAATAACACAG 121654 Query 104571 CGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGC 104627 | | ||||| |||| | || | || ||| | |||| |||| ||||| | Sbjct 121655 CCAGATATGTTGATCAGGGAGGAAATAAGAGACCTGGAGCATTCGCTATCTACCTTGAAC 121714 Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687 | ||||| | ||||| | |||||| | || ||| || || ||| | |||||| Sbjct 121715 CCTGGCATGGAGATATTTTCGAGTTCTTGGATTTGAAGAAGAATCATGGTAAAGAGGAGA 121774 Query 104688 CGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 104746 | | || | ||||| |||| |||| | |||||||| ||||||||||||||||| || Sbjct 121775 A-CAGAGCTAGGGATCTGTTCTACGCTATGTGGATTCCTGATCTCTTCATGAAGAGGGTA 121833 Query 104747 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCC 104806 |||| ||| ||||| ||| | ||||| ||| || | ||||| || || ||| Sbjct 121834 GAGGCTGATGGAGATTGGAGTCTAATGTGTCCTGACCAGTCCCCTGGACT-TC--ATGAG 121890 Query 104807 GT---GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACT 104863 || ||| || ||||| || || || || || || || | ||||| || || || Sbjct 121891 GTTTGGGGAGACGAGTTCGAGGCTCTGTATGAGAAATATGAAAAGGAAGGACG--CGTCT 121948 Query 104864 GC--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 ||| || |||| | | ||| | |||||| | | || |||| ||||| | Sbjct 121949 TGAAGACTGTAAAAGCTCAGCAGCTCTGGTATGCTATTATTGAATCCCAAATTGAGACCG 122008 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 | || || |||||| | ||||| |||||||||||| ||| || || ||||| | | Sbjct 122009 GAACTCCGTACATGTTGTACAAGGACGCCTGTAACAGAAAATCCAACCAGCAGAATCTAG 122068 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 105041 | ||||| | || ||||| || ||||||||| | |||| | | | |||||| Sbjct 122069 GAACCATCAAATGCTCAAATCTGTGCACAGAAATCGTCGAATACTCCGCCCCTGATGAGG 122128 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 105101 ||| || || ||||| || || || || || || || ||| | || || |||| Sbjct 122129 TGGCCGTCTGCAACCTAGCCTCCATTGCCGTCAACATGTTCGTGAACCCTGA---CAAGA 122185 Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTA-CGAAAACTGTCACCAAAAACCTAAACAGA 105160 | | ||| | || || || | |||| || | || || | || |||||| |||| | Sbjct 122186 CCTATGACTTCGAGAAGCT-GAAGAAGGTATCCAAGGTTGCCTGCAGAAACCTCAACAAA 122244 Query 105161 GTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220 |||| || |||| || |||||| || || || ||| || ||| | ||| | Sbjct 122245 ATTATCGACGTTAATTACTATCCCGTTAAGGAGGCACGGAAAAGCAACATGCGTCACAGA 122304 Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 105280 ||||||||| | ||| ||||||| || || |||| | |||||| | | |||| Sbjct 122305 CCAATTGGTATTGGTATTCAGGGCCTGGCTGATGCGTACATTCTCATGAGATTCCCATTC 122364 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || || ||||||| || | || | || ||||| || || || ||| ||| Sbjct 122365 GAATCTAACGAAGCTAAACTTCTAAACAAACAAATCTTTGAAACTATTTACTACGGAGCT 122424 Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAG--GTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 || || || || | ||| | || ||| ||| ||| | |||||||||| | |||| Sbjct 122425 CTGGAAGCAAGCTGTGAGCTTGCCGAGCAATTG--GGTACTTATGAAACCTATCCTGGTT 122482 Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCA 105456 |||| | | || || ||| |||| ||||||||||| | || | ||| | || | Sbjct 122483 CTCCGGTTAGTCAGGGTAGGCTGCAATATGATATGTGGGGA-GTAACACCCA-CTGAGCT 122540 Query 105457 CTACGACTGGG--AAGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTC 105512 | | || |||| ||| || |||| | || ||| || | ||| | | ||| || Sbjct 122541 CCATGATTGGGCTAAG--CTGAAGGCCCAGATTGCAA--AGCATGGTGTAAGGAACTCTC 122596 Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 105572 | ||| ||||||| ||||||||||| ||||| || || || |||| || || || || Sbjct 122597 TGCTCCTGGCTCCTATGCCAACAGCTTCCACTGCTCAGATTCTGGGCAACAACGAGAGCG 122656 Query 105573 TTGAACCCTACACGACGAACATCTA 105597 | || ||||||| | |||||||| Sbjct 122657 TGGAGGCCTACACCAGTAACATCTA 122681 >seq891 Length=807508 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTCGCGTTCCTTTGCTGAGCG 94808 || || || || ||||| | |||||| || | | ||| ||| | | || || || | Sbjct 738249 AAAAAGGCAGACTGGGCCCTCAAGTGGATTAACGCGAAAAACGC-TACATTCGCCGAAAG 738307 Query 94809 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 94868 | | |||| ||||| | |||||| || ||||||||||||||| ||| ||| |||| Sbjct 738308 AATTATCGCTTTTGCCTCTGTTGAAGGAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTT 738367 Query 94869 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 94928 ||| | |||||||||||||| ||||| || || ||| ||||| || ||||| | Sbjct 738368 CTGGTTGAAGAAGCGAGGTCTGATGCCTGGACTTACATTCAGTAACGAACTCATCTCCAG 738427 Query 94929 TGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||| | ||| ||| || || Sbjct 738428 GGACGAGGGATTACACACAGACTTCGC 738454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583210501046760