Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 118 1e-21
seq891 91.5 2e-13
>seq4046
Length=337920
Score = 118 bits (130), Expect = 1e-21
Identities = 119/152 (78%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116
|| || |||||||| |||||| ||| || ||| || |||| |||||||||||||
Sbjct 122150 GAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCAC 122091
Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGC-TCTTCTCGTTACAGGCGTC 79175
| ||| || | |||||||| || | |||| ||||||| | |||| ||||||||||||
Sbjct 122090 AGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCT-GTTACAGGCGTC 122032
Query 79176 CTTGTAGCACATGTACGGCGTCCCGGTCTCAA 79207
|||||| |||||||||| || ||||||||||
Sbjct 122031 CTTGTACAACATGTACGGAGTTCCGGTCTCAA 122000
>seq891
Length=807508
Score = 91.5 bits (100), Expect = 2e-13
Identities = 155/224 (69%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 59892 CTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAG 59951
|||||| || || || || ||| || || || |||| ||||| |||||| | ||
Sbjct 738213 CTGTTCAACGCTATCGAAACCATCCCTGCCGTGAAGAAAAAGGCAGACTGGGCCCTCAAG 738272
Query 59952 TGGATGAGTCCTGGA---GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008
||||| | | | || |||| || || | | || |||||||| | || |||
Sbjct 738273 TGGATTAACGCGAAAAACGCTACATTCGCCGAAAGAATTATCGCTTTTGCCTCTGTTGAA 738332
Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068
||||||||||||||||| ||| || ||||||||| | || ||||| || || |||
Sbjct 738333 GGAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTTCTGGTTGAAGAAGCGAGGTCTGATG 738392
Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112
|| || || | ||| ||||| || || ||| ||||||||||
Sbjct 738393 CCTGGACTTACATTCAGTAACGAACTCATCTCCAGGGACGAGGG 738436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548477496592560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |