Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4046 118 1e-21 seq891 91.5 2e-13 >seq4046 Length=337920 Score = 118 bits (130), Expect = 1e-21 Identities = 119/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || || |||||||| |||||| ||| || ||| || |||| ||||||||||||| Sbjct 122150 GAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCAC 122091 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGC-TCTTCTCGTTACAGGCGTC 79175 | ||| || | |||||||| || | |||| ||||||| | |||| |||||||||||| Sbjct 122090 AGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCT-GTTACAGGCGTC 122032 Query 79176 CTTGTAGCACATGTACGGCGTCCCGGTCTCAA 79207 |||||| |||||||||| || |||||||||| Sbjct 122031 CTTGTACAACATGTACGGAGTTCCGGTCTCAA 122000 >seq891 Length=807508 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/224 (69%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 59892 CTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAG 59951 |||||| || || || || ||| || || || |||| ||||| |||||| | || Sbjct 738213 CTGTTCAACGCTATCGAAACCATCCCTGCCGTGAAGAAAAAGGCAGACTGGGCCCTCAAG 738272 Query 59952 TGGATGAGTCCTGGA---GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008 ||||| | | | || |||| || || | | || |||||||| | || ||| Sbjct 738273 TGGATTAACGCGAAAAACGCTACATTCGCCGAAAGAATTATCGCTTTTGCCTCTGTTGAA 738332 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 ||||||||||||||||| ||| || ||||||||| | || ||||| || || ||| Sbjct 738333 GGAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTTCTGGTTGAAGAAGCGAGGTCTGATG 738392 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 || || || | ||| ||||| || || ||| |||||||||| Sbjct 738393 CCTGGACTTACATTCAGTAACGAACTCATCTCCAGGGACGAGGG 738436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548477496592560