Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 156 5e-33
seq4046 104 3e-17
seq1779 91.5 2e-13
seq4668 86.0 7e-12
>seq6057
Length=130802
Score = 156 bits (172), Expect = 5e-33
Identities = 160/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||| || || || || || ||||| ||| | ||
Sbjct 36681 ATGCAGATCTTCGTCAAGACCTTAACCGGTAAAACCATCACCCTGGAGGTCGAGGCTAGT 36622
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||||||| | || | ||||| || |||||||||||||| |||||||| ||||| |||
Sbjct 36621 GATAGCATCGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCAG 36562
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || || ||||| |||||||| ||||||| | || || | || || |||
Sbjct 36561 CAGAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTACAAT 36502
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614
| || |||||||| ||||||||||| ||
Sbjct 36501 ATTCAGAAGGAATCAACTCTTCATCTGGT 36473
Score = 147 bits (162), Expect = 2e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||| ||||| || || || ||||| ||| | ||
Sbjct 36909 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGCTAGT 36850
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| ||||||| || | ||||| || || ||||||||||| |||||||| ||||| |||
Sbjct 36849 GACAGCATTGAGAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 36790
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || || ||||| ||||| || ||||||| | || || | || || |||
Sbjct 36789 CAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAAT 36730
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614
| || |||||||| |||||||| || ||
Sbjct 36729 ATTCAGAAGGAATCTACTCTTCACCTTGT 36701
Score = 105 bits (116), Expect = 8e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553
||||||||||||| |||||||||||||| |||||| | | || || ||||| ||||| |
Sbjct 37049 TTCAGGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 36990
Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613
| ||||||| | || || | || || ||| |||| |||||||| ||||||||||| |
Sbjct 36989 TGGAGGATGGAAGAACTCTGTCCGATTACAATATCCAGAAGGAATCTACTCTTCATCTGG 36930
Query 27614 T 27614
|
Sbjct 36929 T 36929
Score = 102 bits (112), Expect = 9e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553
||||||||||||| |||||||||||||| |||||| | | || || ||||| ||||| |
Sbjct 39138 TTCAGGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 39079
Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613
| ||||||| | || || | || |||||| | || |||||||| |||||||| || |
Sbjct 39078 TGGAGGATGGAAGAACTCTGTCGGATTATAATATTCAGAAGGAATCTACTCTTCACCTTG 39019
Query 27614 T 27614
|
Sbjct 39018 T 39018
Score = 100 bits (110), Expect = 3e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||||||||| | ||||| ||||| || || || ||||| ||| | ||
Sbjct 38998 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACAATCACCCTGGAGGTCGAGGCTAGT 38939
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515
|| ||||||| || | ||||| || || ||||||||||| ||||||||
Sbjct 38938 GACAGCATTGAGAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCC 38889
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555
||||||||||| |||||||| ||||| |||||| | | || |||||||| ||||| ||
Sbjct 42363 CAGGACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGCTG 42304
Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614
||||||| | || || | || || ||| | || |||||||| ||||||||||| ||
Sbjct 42303 GAGGATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGGT 42245
Score = 96.9 bits (106), Expect = 4e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553
|||||||||| || |||||||| ||||| |||||| | | || || ||||| ||||| |
Sbjct 37637 TTCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 37578
Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613
| ||||||| | || || | ||||| ||| | || |||||||| ||||||||||| |
Sbjct 37577 TGGAGGATGGAAGAACTCTGTCCGACTACAATATTCAGAAGGAATCAACTCTTCATCTGG 37518
Query 27614 T 27614
|
Sbjct 37517 T 37517
Score = 95.1 bits (104), Expect = 1e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || |||||||| || ||||| ||||||||||| |||||||| ||| | |
Sbjct 41765 AATGCAAATTTTCGTCAAGACCCTCACCGGGAAGACTATTACGCTTGAGGTCGAGGCCAG 41706
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGG 27499
|||||||| | ||| | |||||||| |||||||
Sbjct 41705 CGATAGCATCGAGAATGTTAAGGCTAAGATTCAGG 41671
Score = 84.2 bits (92), Expect = 2e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||| || || || || || ||||| ||| || ||
Sbjct 42225 ATGCAGATCTTCGTCAAGACCTTGACCGGTAAAACCATCACCCTGGAGGTCGAGGCAAGT 42166
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGG 27499
|||||||| | || ||||||||||||||||||
Sbjct 42165 GATAGCATCGAGAACGTGAAGGCTAAAATTCAGG 42132
>seq4046
Length=337920
Score = 104 bits (114), Expect = 3e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966
||| || || ||||| ||||||||||| |||| | | | ||||||||||| |||||
Sbjct 122151 GGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCA 122092
Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026
|| ||| || | || || || || || || | |||||| || || ||| || |||||
Sbjct 122091 CAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGCGTC 122032
Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTC 81056
|||||| |||||||||| || ||||||||
Sbjct 122031 CTTGTACAACATGTACGGAGTTCCGGTCTC 122002
Score = 82.4 bits (90), Expect = 9e-11
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 27497 AGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556
|||| ||||||||||| || ||||| |||||| | | || |||||||| || ||||| |
Sbjct 168577 AGGATAAGGAGGGAATCCCCCCAGATCAGCAGAGATTGATCTTTGCTGGGAAACAACTTG 168518
Query 27557 AGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614
| |||| | || ||| | || || || |||| || ||||| || |||||||| ||
Sbjct 168517 AAGATGGCAGAACTCTATCTGATTACAACATCCAGAAAGAATCTACCCTTCATCTGGT 168460
>seq1779
Length=2408633
Score = 91.5 bits (100), Expect = 2e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 27497 AGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556
|||| |||||||||||||| ||||| |||||| | | || || ||||| ||||| || |
Sbjct 504954 AGGATAAGGAGGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGCAAGCAGCTAG 504895
Query 27557 AGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614
|||||| | || ||| | || |||||| | || |||||||| || ||||| || ||
Sbjct 504894 AGGATGGAAGAACTCTATCTGATTATAATATTCAGAAGGAATCTACCCTTCACCTTGT 504837
>seq4668
Length=1644770
Score = 86.0 bits (94), Expect = 7e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553
|| |||| ||||||||||| |||||||| |||||| | | || || ||||| ||||| |
Sbjct 1192839 TTAAGGATAAGGAGGGAATCCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 1192780
Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608
| ||||||| | || ||| | || || || | || ||||||||||| |||||
Sbjct 1192779 TGGAGGATGGAAGAACTCTATCCGATTACAACATTCAGAAGGAATCCACCCTTCA 1192725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570261217856880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |