Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6057 156 5e-33 seq4046 104 3e-17 seq1779 91.5 2e-13 seq4668 86.0 7e-12 >seq6057 Length=130802 Score = 156 bits (172), Expect = 5e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| || || || || || ||||| ||| | || Sbjct 36681 ATGCAGATCTTCGTCAAGACCTTAACCGGTAAAACCATCACCCTGGAGGTCGAGGCTAGT 36622 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||||||| | || | ||||| || |||||||||||||| |||||||| ||||| ||| Sbjct 36621 GATAGCATCGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCAG 36562 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| |||||||| ||||||| | || || | || || ||| Sbjct 36561 CAGAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTACAAT 36502 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || |||||||| ||||||||||| || Sbjct 36501 ATTCAGAAGGAATCAACTCTTCATCTGGT 36473 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| || || || ||||| ||| | || Sbjct 36909 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGCTAGT 36850 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||||| || | ||||| || || ||||||||||| |||||||| ||||| ||| Sbjct 36849 GACAGCATTGAGAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 36790 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| ||||| || ||||||| | || || | || || ||| Sbjct 36789 CAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAAT 36730 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || |||||||| |||||||| || || Sbjct 36729 ATTCAGAAGGAATCTACTCTTCACCTTGT 36701 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 ||||||||||||| |||||||||||||| |||||| | | || || ||||| ||||| | Sbjct 37049 TTCAGGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 36990 Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613 | ||||||| | || || | || || ||| |||| |||||||| ||||||||||| | Sbjct 36989 TGGAGGATGGAAGAACTCTGTCCGATTACAATATCCAGAAGGAATCTACTCTTCATCTGG 36930 Query 27614 T 27614 | Sbjct 36929 T 36929 Score = 102 bits (112), Expect = 9e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 ||||||||||||| |||||||||||||| |||||| | | || || ||||| ||||| | Sbjct 39138 TTCAGGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 39079 Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613 | ||||||| | || || | || |||||| | || |||||||| |||||||| || | Sbjct 39078 TGGAGGATGGAAGAACTCTGTCGGATTATAATATTCAGAAGGAATCTACTCTTCACCTTG 39019 Query 27614 T 27614 | Sbjct 39018 T 39018 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | ||||| ||||| || || || ||||| ||| | || Sbjct 38998 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACAATCACCCTGGAGGTCGAGGCTAGT 38939 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 || ||||||| || | ||||| || || ||||||||||| |||||||| Sbjct 38938 GACAGCATTGAGAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCC 38889 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 ||||||||||| |||||||| ||||| |||||| | | || |||||||| ||||| || Sbjct 42363 CAGGACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGCTG 42304 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 ||||||| | || || | || || ||| | || |||||||| ||||||||||| || Sbjct 42303 GAGGATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGGT 42245 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 |||||||||| || |||||||| ||||| |||||| | | || || ||||| ||||| | Sbjct 37637 TTCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 37578 Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613 | ||||||| | || || | ||||| ||| | || |||||||| ||||||||||| | Sbjct 37577 TGGAGGATGGAAGAACTCTGTCCGACTACAATATTCAGAAGGAATCAACTCTTCATCTGG 37518 Query 27614 T 27614 | Sbjct 37517 T 37517 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || |||||||| || ||||| ||||||||||| |||||||| ||| | | Sbjct 41765 AATGCAAATTTTCGTCAAGACCCTCACCGGGAAGACTATTACGCTTGAGGTCGAGGCCAG 41706 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGG 27499 |||||||| | ||| | |||||||| ||||||| Sbjct 41705 CGATAGCATCGAGAATGTTAAGGCTAAGATTCAGG 41671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| || || || || || ||||| ||| || || Sbjct 42225 ATGCAGATCTTCGTCAAGACCTTGACCGGTAAAACCATCACCCTGGAGGTCGAGGCAAGT 42166 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGG 27499 |||||||| | || |||||||||||||||||| Sbjct 42165 GATAGCATCGAGAACGTGAAGGCTAAAATTCAGG 42132 >seq4046 Length=337920 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 ||| || || ||||| ||||||||||| |||| | | | ||||||||||| ||||| Sbjct 122151 GGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCA 122092 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 || ||| || | || || || || || || | |||||| || || ||| || ||||| Sbjct 122091 CAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGCGTC 122032 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTC 81056 |||||| |||||||||| || |||||||| Sbjct 122031 CTTGTACAACATGTACGGAGTTCCGGTCTC 122002 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 27497 AGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556 |||| ||||||||||| || ||||| |||||| | | || |||||||| || ||||| | Sbjct 168577 AGGATAAGGAGGGAATCCCCCCAGATCAGCAGAGATTGATCTTTGCTGGGAAACAACTTG 168518 Query 27557 AGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | |||| | || ||| | || || || |||| || ||||| || |||||||| || Sbjct 168517 AAGATGGCAGAACTCTATCTGATTACAACATCCAGAAAGAATCTACCCTTCATCTGGT 168460 >seq1779 Length=2408633 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 27497 AGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556 |||| |||||||||||||| ||||| |||||| | | || || ||||| ||||| || | Sbjct 504954 AGGATAAGGAGGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGCAAGCAGCTAG 504895 Query 27557 AGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||||| | || ||| | || |||||| | || |||||||| || ||||| || || Sbjct 504894 AGGATGGAAGAACTCTATCTGATTATAATATTCAGAAGGAATCTACCCTTCACCTTGT 504837 >seq4668 Length=1644770 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 || |||| ||||||||||| |||||||| |||||| | | || || ||||| ||||| | Sbjct 1192839 TTAAGGATAAGGAGGGAATCCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 1192780 Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 | ||||||| | || ||| | || || || | || ||||||||||| ||||| Sbjct 1192779 TGGAGGATGGAAGAACTCTATCCGATTACAACATTCAGAAGGAATCCACCCTTCA 1192725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570261217856880