Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6057 82.4 5e-11 >seq6057 Length=130802 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| ||| ||||| ||||| ||||| || ||||| || || |||| | || || Sbjct 36473 ACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCC 36532 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| || || || || || || | ||| || || || || | ||| |||||||| Sbjct 36533 AGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGA 36592 Query 34618 ATCTTTTGTTTTAACGATAAAATTG-TGTCT-TCGCTCTCCACTTCCACGGTTATCGTTT 34675 ||||| | |||||| | || | || | || ||| || |||| ||| || |||| Sbjct 36593 ATCTTG-GCCTTAACGTTCTCGATGCTATCACTAGC-CTCGACCTCCAGGGTGATGGTTT 36650 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||||||| || || || || |||||||| Sbjct 36651 TACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314703137043467