Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 156 1e-32
seq1779 95.1 3e-14
seq4668 87.8 4e-12
seq347 84.2 5e-11
>seq6057
Length=130802
Score = 156 bits (172), Expect = 1e-32
Identities = 168/220 (76%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955
||| || || |||||||||||||| || || || || || || ||||| | || || ||
Sbjct 36691 AAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCT 36750
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
|||||| ||||||||||| || |||||||| | | || || || || |||| ||||||
Sbjct 36751 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTC 36810
Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGAGAG 211074
||||||||||||||| || ||||| || ||| ||||| ||| || ||||| || |
Sbjct 36811 CTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGC-CTCGACCTCCAGGG 36869
Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||| |||||||| || | ||||| || || | ||||||
Sbjct 36870 TGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909
Score = 127 bits (140), Expect = 5e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956
|| || || || || |||||||| || || || || || || ||||| | || || |||
Sbjct 36464 AGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTT 36523
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
||||| ||||| ||||| || |||||||| | | || || || || |||| |||||||
Sbjct 36524 CCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCC 36583
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGAGAGT 211075
|||||||| ||||| || ||||| |||||| | ||| ||| || ||||| || ||
Sbjct 36584 TTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGC-CTCGACCTCCAGGGT 36642
Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || || || || | ||||| || || | ||||||
Sbjct 36643 GATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Score = 120 bits (132), Expect = 7e-22
Identities = 104/129 (81%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955
||| || || |||||||||||||| || || || || || |||||||||| || || ||
Sbjct 39008 AAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGACAGAGTTCT 39067
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
|||||| ||||||||||| || |||||||| | | || || || ||||||| ||||||
Sbjct 39068 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTC 39127
Query 211016 CTTGTCCTG 211024
|||||||||
Sbjct 39128 CTTGTCCTG 39136
Score = 107 bits (118), Expect = 4e-18
Identities = 101/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955
||| || || || || |||||||| || || || ||||| || ||||| | || || ||
Sbjct 36919 AAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGTTCT 36978
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
|||||| ||||||||||| || |||||||| | | || || || ||||||| ||||||
Sbjct 36979 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTC 37038
Query 211016 CTTGTCCTG 211024
|||||||||
Sbjct 37039 CTTGTCCTG 37047
Score = 96.9 bits (106), Expect = 8e-15
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955
||| || || || || |||||||| || || || || || || ||||| | || || ||
Sbjct 42235 AAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCT 42294
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
|||||| ||||||||||| || || ||||| | | || || || || |||| ||||||
Sbjct 42295 TCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTC 42354
Query 211016 CTTGTCCTGGA 211026
|||||||||||
Sbjct 42355 CTTGTCCTGGA 42365
Score = 89.7 bits (98), Expect = 1e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955
||| || || || || |||||||| || || || || || || || || | || || ||
Sbjct 37507 AAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGACAGAGTTCT 37566
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
|||||| ||||||||||| || |||||||| | | || || || || |||| ||||||
Sbjct 37567 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTC 37626
Query 211016 CTTGTCCTG 211024
||||||||
Sbjct 37627 TTTGTCCTG 37635
>seq1779
Length=2408633
Score = 95.1 bits (104), Expect = 3e-14
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956
|| || || ||||||||||| || || || || || || |||||||| | || || |||
Sbjct 504828 AGCCTGAGAACAAGGTGAAGGGTAGATTCCTTCTGAATATTATAATCAGATAGAGTTCTT 504887
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
||||| || ||||||||||| |||||||| | | || || || || |||| ||| |||
Sbjct 504888 CCATCCTCTAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCCTCC 504947
Query 211017 TTGTCCT 211023
|| ||||
Sbjct 504948 TTATCCT 504954
>seq4668
Length=1644770
Score = 87.8 bits (96), Expect = 4e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
|||||| ||||| || || || ||||| ||||| | || || |||||||| ||||||||
Sbjct 1192724 GTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTTCTTCCATCCTCCAGCTG 1192783
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCT 211023
||| || |||||||| | | || || || ||||| | ||| ||||| ||||
Sbjct 1192784 CTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATCCT 1192836
Score = 86.0 bits (94), Expect = 1e-11
Identities = 83/103 (81%), Gaps = 3/103 (3%)
Strand=Plus/Plus
Query 211017 TTGT-CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGAGAG 211074
|||| |||||||||| || ||||||||||||| |||| ||| ||||||||||| |
Sbjct 1193268 TTGTACCTGGATCTTGGCCTTAACGTTTTCGATGGAGTCACTAGC-CTCAACCTCGAGGG 1193326
Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|||| ||||| ||||| || ||||| ||||| | |||||| ||
Sbjct 1193327 TGATGGTCTTACCCGTCAGGGTCTTAACAAAGATCTGCATGTT 1193369
>seq347
Length=1176111
Score = 84.2 bits (92), Expect = 5e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977
|| ||||| || || || || ||||| | ||||| ||||||||||||||||| || ||
Sbjct 1038886 GTAGACTCCTTCTGAATATTGTAATCTGAGAGGGTTCTTCCATCTTCCAGCTGTTTACCA 1038827
Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026
|||||||| | | || || || || |||| || |||||||||||||
Sbjct 1038826 GCGAAGATCAATCTCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGGA 1038778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159049538570135
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |