Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6057 156 1e-32 seq1779 95.1 3e-14 seq4668 87.8 4e-12 seq347 84.2 5e-11 >seq6057 Length=130802 Score = 156 bits (172), Expect = 1e-32 Identities = 168/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||| || || |||||||||||||| || || || || || || ||||| | || || || Sbjct 36691 AAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCT 36750 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||| ||||||||||| || |||||||| | | || || || || |||| |||||| Sbjct 36751 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTC 36810 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGAGAG 211074 ||||||||||||||| || ||||| || ||| ||||| ||| || ||||| || | Sbjct 36811 CTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGC-CTCGACCTCCAGGG 36869 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| |||||||| || | ||||| || || | |||||| Sbjct 36870 TGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || || || || |||||||| || || || || || || ||||| | || || ||| Sbjct 36464 AGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTT 36523 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| ||||| ||||| || |||||||| | | || || || || |||| ||||||| Sbjct 36524 CCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCC 36583 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGAGAGT 211075 |||||||| ||||| || ||||| |||||| | ||| ||| || ||||| || || Sbjct 36584 TTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGC-CTCGACCTCCAGGGT 36642 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || | ||||| || || | |||||| Sbjct 36643 GATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Score = 120 bits (132), Expect = 7e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||| || || |||||||||||||| || || || || || |||||||||| || || || Sbjct 39008 AAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGACAGAGTTCT 39067 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||| ||||||||||| || |||||||| | | || || || ||||||| |||||| Sbjct 39068 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTC 39127 Query 211016 CTTGTCCTG 211024 ||||||||| Sbjct 39128 CTTGTCCTG 39136 Score = 107 bits (118), Expect = 4e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||| || || || || |||||||| || || || ||||| || ||||| | || || || Sbjct 36919 AAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGTTCT 36978 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||| ||||||||||| || |||||||| | | || || || ||||||| |||||| Sbjct 36979 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTC 37038 Query 211016 CTTGTCCTG 211024 ||||||||| Sbjct 37039 CTTGTCCTG 37047 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||| || || || || |||||||| || || || || || || ||||| | || || || Sbjct 42235 AAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCT 42294 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||| ||||||||||| || || ||||| | | || || || || |||| |||||| Sbjct 42295 TCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTC 42354 Query 211016 CTTGTCCTGGA 211026 ||||||||||| Sbjct 42355 CTTGTCCTGGA 42365 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||| || || || || |||||||| || || || || || || || || | || || || Sbjct 37507 AAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGACAGAGTTCT 37566 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||| ||||||||||| || |||||||| | | || || || || |||| |||||| Sbjct 37567 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTC 37626 Query 211016 CTTGTCCTG 211024 |||||||| Sbjct 37627 TTTGTCCTG 37635 >seq1779 Length=2408633 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || || ||||||||||| || || || || || || |||||||| | || || ||| Sbjct 504828 AGCCTGAGAACAAGGTGAAGGGTAGATTCCTTCTGAATATTATAATCAGATAGAGTTCTT 504887 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| || ||||||||||| |||||||| | | || || || || |||| ||| ||| Sbjct 504888 CCATCCTCTAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCCTCC 504947 Query 211017 TTGTCCT 211023 || |||| Sbjct 504948 TTATCCT 504954 >seq4668 Length=1644770 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| ||||| || || || ||||| ||||| | || || |||||||| |||||||| Sbjct 1192724 GTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTTCTTCCATCCTCCAGCTG 1192783 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCT 211023 ||| || |||||||| | | || || || ||||| | ||| ||||| |||| Sbjct 1192784 CTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATCCT 1192836 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/103 (81%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 211017 TTGT-CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGAGAG 211074 |||| |||||||||| || ||||||||||||| |||| ||| ||||||||||| | Sbjct 1193268 TTGTACCTGGATCTTGGCCTTAACGTTTTCGATGGAGTCACTAGC-CTCAACCTCGAGGG 1193326 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||| ||||| ||||| || ||||| ||||| | |||||| || Sbjct 1193327 TGATGGTCTTACCCGTCAGGGTCTTAACAAAGATCTGCATGTT 1193369 >seq347 Length=1176111 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || || || || ||||| | ||||| ||||||||||||||||| || || Sbjct 1038886 GTAGACTCCTTCTGAATATTGTAATCTGAGAGGGTTCTTCCATCTTCCAGCTGTTTACCA 1038827 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 |||||||| | | || || || || |||| || ||||||||||||| Sbjct 1038826 GCGAAGATCAATCTCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGGA 1038778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159049538570135