Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 143 6e-29
seq1779 95.1 3e-14
seq4668 84.2 5e-11
>seq6057
Length=130802
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
||| || || |||||||| ||||| ||||| || || | ||||||||||| || ||||||
Sbjct 36691 AAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCT 36750
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
||||| || |||||||| ||||||||||| | || || || || || ||||| |||||
Sbjct 36751 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTC 36810
Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
|||||| |||||||| ||| || || ||| |||| | || || || | ||
Sbjct 36811 CTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACCTCCAGGGT 36870
Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| ||||| || ||||| || || | ||| | |||||
Sbjct 36871 GATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909
Score = 116 bits (128), Expect = 9e-21
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
||| || || || || || ||||| ||||| || |||| ||||||||||| || ||||||
Sbjct 36919 AAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGTTCT 36978
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
||||| || |||||||| ||||||||||| | || || || || || ||||| |||||
Sbjct 36979 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTC 37038
Query 225615 CTTGTCTTG 225623
|||||| ||
Sbjct 37039 CTTGTCCTG 37047
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
|| || || || || || ||||| ||||| || || | ||||||||||| || ||||||
Sbjct 36464 AGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTT 36523
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
||||| || || ||||| ||||||||||| | || || || || || ||||| ||||||
Sbjct 36524 CCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCC 36583
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
||||| || ||||| ||| || |||||| | || | || || || | |||
Sbjct 36584 TTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTG 36643
Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || || || || || || | ||| | |||||
Sbjct 36644 ATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Score = 111 bits (122), Expect = 4e-19
Identities = 102/129 (79%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
||| || || |||||||| ||||| ||||| || || | ||| ||||| | || ||||||
Sbjct 39008 AAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGACAGAGTTCT 39067
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
||||| || |||||||| ||||||||||| | || || || || || ||||| |||||
Sbjct 39068 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTC 39127
Query 225615 CTTGTCTTG 225623
|||||| ||
Sbjct 39128 CTTGTCCTG 39136
Score = 111 bits (122), Expect = 4e-19
Identities = 103/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
||| || || || || || ||||| ||||| || || | ||||||||||| || ||||||
Sbjct 42235 AAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCT 42294
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
||||| || |||||||| ||||| ||||| | || || || || || ||||| |||||
Sbjct 42295 TCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTC 42354
Query 225615 CTTGTCTTGGA 225625
|||||| ||||
Sbjct 42355 CTTGTCCTGGA 42365
Score = 102 bits (112), Expect = 2e-16
Identities = 100/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
||| || || || || || ||||| ||||| || || | |||||| |||| || ||||||
Sbjct 37507 AAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGACAGAGTTCT 37566
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
||||| || |||||||| ||||||||||| | || || || || || ||||| |||||
Sbjct 37567 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTC 37626
Query 225615 CTTGTCTTG 225623
||||| ||
Sbjct 37627 TTTGTCCTG 37635
>seq1779
Length=2408633
Score = 95.1 bits (104), Expect = 3e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
|| || || |||||||| || || ||||| || || | ||| ||||| | | ||||||
Sbjct 504828 AGCCTGAGAACAAGGTGAAGGGTAGATTCCTTCTGAATATTATAATCAGATAGAGTTCTT 504887
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
||||| ||||||||||| ||||||||||| | || || || || || ||||| || |||
Sbjct 504888 CCATCCTCTAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCCTCC 504947
Query 225616 TTGTC 225620
|| ||
Sbjct 504948 TTATC 504952
>seq4668
Length=1644770
Score = 84.2 bits (92), Expect = 5e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569
||| || |||||||| || || | |||||||||| | |||||| ||||| || |||||
Sbjct 1192724 GTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTTCTTCCATCCTCCAGCTG 1192783
Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||||||||| | || || || || || || || || ||||| ||
Sbjct 1192784 CTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATC 1192834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192425788067906
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |