Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6057 143 6e-29 seq1779 95.1 3e-14 seq4668 84.2 5e-11 >seq6057 Length=130802 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| || || |||||||| ||||| ||||| || || | ||||||||||| || |||||| Sbjct 36691 AAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCT 36750 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 ||||| || |||||||| ||||||||||| | || || || || || ||||| ||||| Sbjct 36751 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTC 36810 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||| |||||||| ||| || || ||| |||| | || || || | || Sbjct 36811 CTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACCTCCAGGGT 36870 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||| || ||||| || || | ||| | ||||| Sbjct 36871 GATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909 Score = 116 bits (128), Expect = 9e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| || || || || || ||||| ||||| || |||| ||||||||||| || |||||| Sbjct 36919 AAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGTTCT 36978 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 ||||| || |||||||| ||||||||||| | || || || || || ||||| ||||| Sbjct 36979 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTC 37038 Query 225615 CTTGTCTTG 225623 |||||| || Sbjct 37039 CTTGTCCTG 37047 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || || || || || || ||||| ||||| || || | ||||||||||| || |||||| Sbjct 36464 AGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTT 36523 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || || ||||| ||||||||||| | || || || || || ||||| |||||| Sbjct 36524 CCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCC 36583 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| ||| || |||||| | || | || || || | ||| Sbjct 36584 TTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTG 36643 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || || || | ||| | ||||| Sbjct 36644 ATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Score = 111 bits (122), Expect = 4e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| || || |||||||| ||||| ||||| || || | ||| ||||| | || |||||| Sbjct 39008 AAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGACAGAGTTCT 39067 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 ||||| || |||||||| ||||||||||| | || || || || || ||||| ||||| Sbjct 39068 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTC 39127 Query 225615 CTTGTCTTG 225623 |||||| || Sbjct 39128 CTTGTCCTG 39136 Score = 111 bits (122), Expect = 4e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| || || || || || ||||| ||||| || || | ||||||||||| || |||||| Sbjct 42235 AAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTTCT 42294 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 ||||| || |||||||| ||||| ||||| | || || || || || ||||| ||||| Sbjct 42295 TCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTC 42354 Query 225615 CTTGTCTTGGA 225625 |||||| |||| Sbjct 42355 CTTGTCCTGGA 42365 Score = 102 bits (112), Expect = 2e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| || || || || || ||||| ||||| || || | |||||| |||| || |||||| Sbjct 37507 AAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGACAGAGTTCT 37566 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 ||||| || |||||||| ||||||||||| | || || || || || ||||| ||||| Sbjct 37567 TCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTC 37626 Query 225615 CTTGTCTTG 225623 ||||| || Sbjct 37627 TTTGTCCTG 37635 >seq1779 Length=2408633 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || || || |||||||| || || ||||| || || | ||| ||||| | | |||||| Sbjct 504828 AGCCTGAGAACAAGGTGAAGGGTAGATTCCTTCTGAATATTATAATCAGATAGAGTTCTT 504887 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| ||||||||||| ||||||||||| | || || || || || ||||| || ||| Sbjct 504888 CCATCCTCTAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCCTCC 504947 Query 225616 TTGTC 225620 || || Sbjct 504948 TTATC 504952 >seq4668 Length=1644770 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || |||||||| || || | |||||||||| | |||||| ||||| || ||||| Sbjct 1192724 GTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTTCTTCCATCCTCCAGCTG 1192783 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| | || || || || || || || || ||||| || Sbjct 1192784 CTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATC 1192834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192425788067906