Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4046 457 1e-123 >seq4046 Length=337920 Score = 457 bits (506), Expect = 1e-123 Identities = 1001/1486 (67%), Gaps = 25/1486 (2%) Strand=Plus/Minus Query 77154 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTA 77213 ||||| || |||||||| || | ||||| || ||||| |||| ||| |||||||| Sbjct 122684 GTGTAGATGTTACTGGTGTAGGCCTCCACGCTCTCGTTGTTGCCCAGAATCTGAGCAGTG 122625 Query 77214 GAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTA 77273 ||||| ||||||||||| |||| | | | || || | |||||| || || | Sbjct 122624 GAAGCTGTTGGCATAGGAGCCAGGAGCAGAGAGTTCCTTACACCATGCTTTGCAATCTGG 122565 Query 77274 TCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGT 77333 | || || | |||||| || || | ||| || |||| | ||| ||||| Sbjct 122564 GCCTTCAGCTTAGCCCAATCATGGAGCTCAGTGGGTGTTACTCCCCACATATCATATTGC 122505 Query 77334 AGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCT 77393 || | || | |||| | || ||| ||| |||||||||| || | || || Sbjct 122504 AGCCTACCCTGACTAACCGGAGAACCAGGATAGGTTTCATAAGTACCCAATTGCTCGGCA 122445 Query 77394 AGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGA 77453 || ||||| || ||||||| |||||||| ||||| ||||| || || | || || ||| Sbjct 122444 AGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTTTAGA 122385 Query 77454 TCTTGTGCTTCAATACTATCAAACGGATAATGTAAA-AGAATAAAGGCATCTGCTAATCC 77512 || ||||| || || || || ||| | | ||||| | ||||| || | || Sbjct 122384 AGTTTAGCTTCGTTAGATTCGAATGGG-AATCTCATGAGAATGTACGCATCAGCCAGGCC 122326 Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTA---GCTTCTGGAAT 77569 ||||| ||||||||||| ||||| || | | | ||| |||| || || || Sbjct 122325 CTGAATACCAATACCAATTGGTCTGTGACGCATGTTGC---TTTTCCGTGCCTCCTTAAC 122269 Query 77570 AGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTC 77629 ||||| ||||||| ||| |||||||| ||||| ||||| | || || || | Sbjct 122268 GGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGGATACCTT 122209 Query 77630 CTTTAGTTTAAGAAAATCAAA--TCTTC-CATCTATAACAAACATGTTCAAAGCTATAGA 77686 ||| || || || ||| | |||| || | || |||||||| | || || || Sbjct 122208 CTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGGCAATGGA 122149 Query 77687 TGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAG 77746 ||||| || || || || ||||||| || | || |||| | || || || || || Sbjct 122148 GGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCACAG 122089 Query 77747 ATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTT 77806 ||| |||||||| || || ||||| || |||||| ||| | || || | |||||| Sbjct 122088 ATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGCGTCCTT 122029 Query 77807 ATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGAC 77866 || | || ||||||| ||||| ||||| || ||||| ||||||| | ||||| | Sbjct 122028 GTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACCAGA-GCT 121970 Query 77867 TCT-AGCTTTTATCATAGATTTGTAT-CGCCTCTCTC--TTTCATATTGAGTATATAGCC 77922 || |||||||| || || | ||| || || ||||||||| ||| || Sbjct 121969 GCTGAGCTTTTAC---AGTCTTCAAGACGCGTCCTTCCTTTTCATATTTCTCATACAGAG 121913 Query 77923 GTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATG 77982 || || || ||||||||||| |||| | ||||||| | | | || ||||| | Sbjct 121912 CCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATTAGAC 121853 Query 77983 ACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 78042 ||| || ||||| ||| || | ||||| ||||||||||| ||||| | ||| | Sbjct 121852 TCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTAGA 121793 Query 78043 ATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCA 78102 | ||||| | | ||| | || || || || |||||| || | ||| | ||||| | Sbjct 121792 ACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCAAGAACTCGA 121733 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTC 78162 |||||| |||||| ||||| || || || || | ||||||||| ||||| |||| Sbjct 121732 AAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTATTTCCTC 121673 Query 78163 CCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAG 78222 ||||||| | ||||||||| ||||||||| | ||||||| ||| ||||| | ||||||| Sbjct 121672 CCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACCCGTTAG 121613 Query 78223 ATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATA---TTACTAATGGATA 78279 | || || ||||| | ||| || ||| || || ||| | | | || | Sbjct 121612 AGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAACATTG---A 121556 Query 78280 TCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATAC 78339 ||| || ||||| || ||| || ||||||||||| ||||||| |||||||| |||| Sbjct 121555 GCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATCGTAAATAC 121496 Query 78340 CCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAG 78399 | || ||| || ||| ||||||| || ||| || | || || | || Sbjct 121495 CTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGGACGGGGAG 121436 Query 78400 TTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGT 78459 | | || ||||||| |||||||| || || |||||| | | | ||||| |||| || Sbjct 121435 TAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAGAAGATCGT 121376 Query 78460 ATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACA 78519 | |||||||| || || || || ||| | || |||||||| || || | |||||||| Sbjct 121375 AGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCTCATCAACA 121316 Query 78520 TATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAG 78579 | ||||| ||||| || ||| ||| || || || |||| | ||| || | | Sbjct 121315 TCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACGCTCTAGGG 121256 Query 78580 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | ||||| || ||||| | |||| || || | ||||||||| || Sbjct 121255 TCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGAT 121210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694608893499360