Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 401 9e-107
seq891 100 4e-16
>seq4046
Length=337920
Score = 401 bits (444), Expect = 9e-107
Identities = 995/1496 (67%), Gaps = 22/1496 (1%)
Strand=Plus/Minus
Query 75737 AATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796
||||| |||| ||||| || |||||||| || | ||||| || ||||| |||| |
Sbjct 122695 AATAC-CTTCTTGTGTAGATGTTACTGGTGTAGGCCTCCACGCTCTCGTTGTTGCCCAGA 122637
Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 75856
|| |||||||| ||||| || |||||||| |||| | | | || || | ||||||
Sbjct 122636 ATCTGAGCAGTGGAAGCTGTTGGCATAGGAGCCAGGAGCAGAGAGTTCCTTACACCATGC 122577
Query 75857 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAG 75916
|| || | | || || | |||||| || || | ||| || ||||
Sbjct 122576 TTTGCAATCTGGGCCTTCAGCTTAGCCCAATCATGGAGCTCAGTGGGTGTTACTCCCCAC 122517
Query 75917 AGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCG 75976
| ||| ||||| || | || | ||| | || ||| ||| ||||| ||||| ||
Sbjct 122516 ATATCATATTGCAGCCTACCCTGACTAACCGGAGAACCAGGATAGGTTTCATAAGTACCC 122457
Query 75977 TCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATC 76036
| || || || || || || || || | || ||||| ||||| ||||| || ||
Sbjct 122456 AATTGCTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATT 122397
Query 76037 TTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAA-AGAATAAATGC 76095
| || || ||| || ||||| | || || || ||| | | ||||| | ||
Sbjct 122396 TGTTTGTTTAGAAGTTTAGCTTCGTTAGATTCGAATGGG-AATCTCATGAGAATGTACGC 122338
Query 76096 ATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAG- 76154
||| || || ||||||| ||||||||||| ||||| || | | | ||| |||| |
Sbjct 122337 ATCAGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTTGCT--TTTCCGT 122280
Query 76155 -CTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACT 76213
| || || || || ||||||| || |||||||| ||||| |||||| | ||
Sbjct 122279 GCCTCCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACC 122220
Query 76214 TTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---TTTCCATCTATCACAAACATATTA 76270
|| || | ||| || || || ||| | || || |||| ||||| ||
Sbjct 122219 TTGGATACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTG 122160
Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATC 76330
| || || || ||||| || || ||||| ||||||| || || |||| | ||
Sbjct 122159 ACGGCAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATT 122100
Query 76331 TCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTA 76390
|| ||||| ||||| || ||||| ||||| ||||| || |||||| ||| |||||
Sbjct 122099 TCTGTGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTA 122040
Query 76391 CATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGAT 76450
|| | |||||| || | | |||||||||| || ||||| || ||||| |||||||
Sbjct 122039 CAGGCGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCA 121980
Query 76451 TTCCAGACGACTCT-AGCTTTTATTATAGATTTGTAT-CGCTTCTCTC--TTTCATATTG 76506
| ||||| | || |||||||| || || | ||| || || |||||||||
Sbjct 121979 TACCAGA-GCTGCTGAGCTTTTAC---AGTCTTCAAGACGCGTCCTTCCTTTTCATATTT 121924
Query 76507 TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGG 76566
||| | || || || ||||||||||| |||| | ||||| | | | ||
Sbjct 121923 CTCATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGG 121864
Query 76567 ACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCA 76626
|||||| | ||| || ||||| ||| |||| ||||| ||||||||||| |||||
Sbjct 121863 ACACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCA 121804
Query 76627 TAGAGCAATAAATAGATCTCGGGTTCTACGTTCT--TCATTTCCTGTATTCTTTTTAAGA 76684
| ||| || ||||| | | ||| ||||| || || || |||||| || | |
Sbjct 121803 CATAGCGTAGAACAGATCCCTAGCTCT--GTTCTCCTCTTTACCATGATTCTTCTTCAAA 121746
Query 76685 TCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGT 76744
|| | |||||| | |||||| |||||| ||||| || || || || | | || |||
Sbjct 121745 TCCAAGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGT 121686
Query 76745 CGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGA 76804
| ||||| ||||||||||| | ||||||||| ||||||||| | ||||||| ||| |||
Sbjct 121685 CTCTTATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGA 121626
Query 76805 ATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTA 76864
|| | |||||||| ||| || ||||| | ||| || ||| ||||| |||
Sbjct 121625 ATCAACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAG 121566
Query 76865 CTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTG 76924
|| | || || || ||||| || || ||||||||||| || ||||||| ||
Sbjct 121565 TGAACATTGAGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTA 121506
Query 76925 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA 76984
|| || || || || ||| ||| ||| ||||||| || ||| || | ||
Sbjct 121505 TCGTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGG 121446
Query 76985 TGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAA 77044
|| | ||| | || ||||| | || ||||| || ||||| ||| | | | |||
Sbjct 121445 GGACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAA 121386
Query 77045 AGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACA 77104
|| |||| ||| |||||||| | | || |||||| | || ||||||||||| ||
Sbjct 121385 AGAAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACT 121326
Query 77105 CGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGAT 77164
| ||||||||| ||||| |||| || || ||| || || || |||| | |||
Sbjct 121325 CTCATCAACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTA 121266
Query 77165 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
|| | || ||||| || ||||| | |||| || || | |||||||| ||
Sbjct 121265 CGCTCTAGGGTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGAT 121210
>seq891
Length=807508
Score = 100 bits (110), Expect = 4e-16
Identities = 145/204 (71%), Gaps = 3/204 (1%)
Strand=Plus/Minus
Query 46671 TTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGC 46730
||||||| ||||| || |||||||| || || ||||| || | ||| || || || ||
Sbjct 738416 TTCGTTACTGAATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCGGC 738357
Query 46731 GAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA 46790
|||| ||||| ||||| || ||||| |||| || || |||| || ||| || || |
Sbjct 738356 GAAACTACCAGAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCGAA 738297
Query 46791 ACTGGCATCATTA---TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGG 46847
| || | || | ||||||| | | ||||| || ||||||||||| || |||
Sbjct 738296 TGTAGCGTTTTTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCACGGCAGG 738237
Query 46848 CATTGTTTCTATAGCATTAAAGAG 46871
|| ||||| ||||| || || ||
Sbjct 738236 GATGGTTTCGATAGCGTTGAACAG 738213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712872918319680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |