Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4046 401 9e-107 seq891 100 4e-16 >seq4046 Length=337920 Score = 401 bits (444), Expect = 9e-107 Identities = 995/1496 (67%), Gaps = 22/1496 (1%) Strand=Plus/Minus Query 75737 AATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796 ||||| |||| ||||| || |||||||| || | ||||| || ||||| |||| | Sbjct 122695 AATAC-CTTCTTGTGTAGATGTTACTGGTGTAGGCCTCCACGCTCTCGTTGTTGCCCAGA 122637 Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 75856 || |||||||| ||||| || |||||||| |||| | | | || || | |||||| Sbjct 122636 ATCTGAGCAGTGGAAGCTGTTGGCATAGGAGCCAGGAGCAGAGAGTTCCTTACACCATGC 122577 Query 75857 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAG 75916 || || | | || || | |||||| || || | ||| || |||| Sbjct 122576 TTTGCAATCTGGGCCTTCAGCTTAGCCCAATCATGGAGCTCAGTGGGTGTTACTCCCCAC 122517 Query 75917 AGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCG 75976 | ||| ||||| || | || | ||| | || ||| ||| ||||| ||||| || Sbjct 122516 ATATCATATTGCAGCCTACCCTGACTAACCGGAGAACCAGGATAGGTTTCATAAGTACCC 122457 Query 75977 TCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATC 76036 | || || || || || || || || | || ||||| ||||| ||||| || || Sbjct 122456 AATTGCTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATT 122397 Query 76037 TTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAA-AGAATAAATGC 76095 | || || ||| || ||||| | || || || ||| | | ||||| | || Sbjct 122396 TGTTTGTTTAGAAGTTTAGCTTCGTTAGATTCGAATGGG-AATCTCATGAGAATGTACGC 122338 Query 76096 ATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAG- 76154 ||| || || ||||||| ||||||||||| ||||| || | | | ||| |||| | Sbjct 122337 ATCAGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTTGCT--TTTCCGT 122280 Query 76155 -CTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACT 76213 | || || || || ||||||| || |||||||| ||||| |||||| | || Sbjct 122279 GCCTCCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACC 122220 Query 76214 TTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---TTTCCATCTATCACAAACATATTA 76270 || || | ||| || || || ||| | || || |||| ||||| || Sbjct 122219 TTGGATACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTG 122160 Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATC 76330 | || || || ||||| || || ||||| ||||||| || || |||| | || Sbjct 122159 ACGGCAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATT 122100 Query 76331 TCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTA 76390 || ||||| ||||| || ||||| ||||| ||||| || |||||| ||| ||||| Sbjct 122099 TCTGTGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTA 122040 Query 76391 CATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGAT 76450 || | |||||| || | | |||||||||| || ||||| || ||||| ||||||| Sbjct 122039 CAGGCGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCA 121980 Query 76451 TTCCAGACGACTCT-AGCTTTTATTATAGATTTGTAT-CGCTTCTCTC--TTTCATATTG 76506 | ||||| | || |||||||| || || | ||| || || ||||||||| Sbjct 121979 TACCAGA-GCTGCTGAGCTTTTAC---AGTCTTCAAGACGCGTCCTTCCTTTTCATATTT 121924 Query 76507 TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGG 76566 ||| | || || || ||||||||||| |||| | ||||| | | | || Sbjct 121923 CTCATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGG 121864 Query 76567 ACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCA 76626 |||||| | ||| || ||||| ||| |||| ||||| ||||||||||| ||||| Sbjct 121863 ACACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCA 121804 Query 76627 TAGAGCAATAAATAGATCTCGGGTTCTACGTTCT--TCATTTCCTGTATTCTTTTTAAGA 76684 | ||| || ||||| | | ||| ||||| || || || |||||| || | | Sbjct 121803 CATAGCGTAGAACAGATCCCTAGCTCT--GTTCTCCTCTTTACCATGATTCTTCTTCAAA 121746 Query 76685 TCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGT 76744 || | |||||| | |||||| |||||| ||||| || || || || | | || ||| Sbjct 121745 TCCAAGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGT 121686 Query 76745 CGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGA 76804 | ||||| ||||||||||| | ||||||||| ||||||||| | ||||||| ||| ||| Sbjct 121685 CTCTTATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGA 121626 Query 76805 ATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTA 76864 || | |||||||| ||| || ||||| | ||| || ||| ||||| ||| Sbjct 121625 ATCAACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAG 121566 Query 76865 CTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTG 76924 || | || || || ||||| || || ||||||||||| || ||||||| || Sbjct 121565 TGAACATTGAGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTA 121506 Query 76925 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA 76984 || || || || || ||| ||| ||| ||||||| || ||| || | || Sbjct 121505 TCGTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGG 121446 Query 76985 TGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAA 77044 || | ||| | || ||||| | || ||||| || ||||| ||| | | | ||| Sbjct 121445 GGACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAA 121386 Query 77045 AGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACA 77104 || |||| ||| |||||||| | | || |||||| | || ||||||||||| || Sbjct 121385 AGAAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACT 121326 Query 77105 CGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGAT 77164 | ||||||||| ||||| |||| || || ||| || || || |||| | ||| Sbjct 121325 CTCATCAACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTA 121266 Query 77165 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || | || ||||| || ||||| | |||| || || | |||||||| || Sbjct 121265 CGCTCTAGGGTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGAT 121210 >seq891 Length=807508 Score = 100 bits (110), Expect = 4e-16 Identities = 145/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 46671 TTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGC 46730 ||||||| ||||| || |||||||| || || ||||| || | ||| || || || || Sbjct 738416 TTCGTTACTGAATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCGGC 738357 Query 46731 GAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA 46790 |||| ||||| ||||| || ||||| |||| || || |||| || ||| || || | Sbjct 738356 GAAACTACCAGAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCGAA 738297 Query 46791 ACTGGCATCATTA---TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGG 46847 | || | || | ||||||| | | ||||| || ||||||||||| || ||| Sbjct 738296 TGTAGCGTTTTTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCACGGCAGG 738237 Query 46848 CATTGTTTCTATAGCATTAAAGAG 46871 || ||||| ||||| || || || Sbjct 738236 GATGGTTTCGATAGCGTTGAACAG 738213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712872918319680