Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6057 129 1e-24 seq4046 109 1e-18 >seq6057 Length=130802 Score = 129 bits (142), Expect = 1e-24 Identities = 164/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| ||||| || ||||||||||| || || || || || |||||||||| | ||| Sbjct 36460 CCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGT 36519 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 ||| ||||| || || ||||| || |||||||| | |||||||| || | | ||| Sbjct 36520 TCTTCCATCCTCCAGTTGCTTT--CCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATT 36577 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 |||||||| || ||||| || || || |||| | ||| || | ||| || || Sbjct 36578 CCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCC 36637 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || | ||||| ||||||| |||||| Sbjct 36638 AGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Score = 122 bits (134), Expect = 2e-22 Identities = 162/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || ||||| ||||| ||||||||||| || || || || |||||||||| | |||| Sbjct 36689 CTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTT 36748 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || ||||| || || ||||| || |||||||| | |||||||| || | | |||| Sbjct 36749 CTTCCATCCTCCAGCTGCTTT--CCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTC 36806 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| || || || || || || |||| | |||||| | ||| || || | Sbjct 36807 CTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACCTCCA 36866 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || || || | ||||| ||||||| |||||| Sbjct 36867 GGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909 Score = 104 bits (114), Expect = 5e-17 Identities = 105/135 (78%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || ||||| || |||||||||||||| || || ||||| |||||||||| | |||| Sbjct 36917 CTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGAGTT 36976 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || ||||| || || ||||| || |||||||| | |||||||| || | | |||| Sbjct 36977 CTTCCATCCTCCAGCTGCTTT--CCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTC 37034 Query 152002 CTTCCTTTTCTTGAA 152016 ||||||| || |||| Sbjct 37035 CTTCCTTGTCCTGAA 37049 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/133 (76%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || ||||| || |||||||||||||| || || || || |||||||||| | |||| Sbjct 42233 CTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGACAGAGTT 42292 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || ||||| || || ||||| || || ||||| | |||||||| || | | |||| Sbjct 42293 CTTCCATCCTCCAGCTGCTTT--CCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATTC 42350 Query 152002 CTTCCTTTTCTTG 152014 ||||||| || || Sbjct 42351 CTTCCTTGTCCTG 42363 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || ||||| ||||| ||||||||||| || || || || || ||||| | | |||| Sbjct 39006 CTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGACAGAGTT 39065 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || ||||| || || ||||| || |||||||| | |||||||| || | | |||| Sbjct 39066 CTTCCATCCTCCAGCTGCTTT--CCAGCGAAGATCAATCTCTGCTGATCTGGAGGAATTC 39123 Query 152002 CTTCCTTTTCTTGAA 152016 ||||||| || |||| Sbjct 39124 CTTCCTTGTCCTGAA 39138 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || ||||| || ||||||||||| || || || || || ||||| |||| | |||| Sbjct 37505 CTAAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGACAGAGTT 37564 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || ||||| || || ||||| || |||||||| | |||||||| || | | |||| Sbjct 37565 CTTCCATCCTCCAGCTGCTTT--CCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTC 37622 Query 152002 CTTCCTTTTCTTGAA 152016 |||| || || |||| Sbjct 37623 CTTCTTTGTCCTGAA 37637 >seq4046 Length=337920 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || ||||| || |||||||| ||||| ||||| |||||||||||||| | || |||| Sbjct 168448 CTAAGCCTGAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGATAGAGTT 168507 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| || |||||| || ||||| | |||||||| || | | |||||| Sbjct 168508 CTGCCATCTTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCC 168567 Query 152004 TCCTTTTC 152011 ||||| || Sbjct 168568 TCCTTATC 168575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153718809813229