Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2112 96.9 7e-15 seq4046 86.0 1e-11 seq4668 84.2 5e-11 >seq2112 Length=2039691 Score = 96.9 bits (106), Expect = 7e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43987 GCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACTCCG 44046 || || || || ||| |||| |||||||| ||||| |||| || | ||||| ||||| Sbjct 1342002 GCTTCTACCTCTGAGCTGTATGGAAAGGTCCAGGAAGTTCCACAGAAAGAAACAACTCCA 1342061 Query 44047 TTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGG 44094 ||||||||||||||||||||||| ||||| || || | ||| || ||| Sbjct 1342062 TTTTATCCCCGGAGTCCATATGGAGTGGCTAAACTCTTTGCATACTGG 1342109 >seq4046 Length=337920 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || |||||||| | || |||||| ||||||||||| |||| || || | |||||| Sbjct 168457 AGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGATAGAGTTCTGCCATCT 168516 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || ||||||||||| ||||||||||| | || || || || || |||||||| || Sbjct 168517 TCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCCTCCTTATCC 168576 Query 283008 TGGAT 283012 | ||| Sbjct 168577 TAGAT 168581 >seq4668 Length=1644770 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 |||||||| || || ||| | ||||| | ||| ||| || || ||||| ||||| ||| Sbjct 1193275 TGGATCTTGGCCTTAACGTTTTCGATGGAGTCACTAGCCTCAACCTCGAGGGTGATGGTC 1193334 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 |||||||||| |||||||| || |||||||| ||| Sbjct 1193335 TTACCCGTCAGGGTCTTAACAAAGATCTGCATGTTC 1193370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046646675123946