Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 122 6e-23
seq4668 84.2 2e-11
>seq6057
Length=130802
Score = 122 bits (134), Expect = 6e-23
Identities = 170/234 (73%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || || | || |||||||| || ||||| || || ||||||||
Sbjct 36679 CATACCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATC 36738
Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
|| ||||| | | || ||||||||||| || || |||||||| | ||||||||||
Sbjct 36739 GGACAGAGTT--CTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCT 36796
Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283
| || | |||||||| ||| ||||| || | || |||| | ||| |||| |
Sbjct 36797 GGGGGAATTCCTTCCTTGTCCTGGATCTT-GGCCTTAACGTTCTCAATGCTGTCACTAGC 36855
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||| || || |||||||| || | |||||| |||||||| |||||
Sbjct 36856 CTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909
Score = 100 bits (110), Expect = 2e-16
Identities = 164/232 (71%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168
|||| || || || || | ||||| ||||| || ||||| || || ||||||||||
Sbjct 36453 TTCCTCCCCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGG 36512
Query 44169 C--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
||||| | | || ||||| ||||| || || |||||||| | |||||||||||
Sbjct 36513 ACAGAGTT--CTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGG 36570
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | |||||||| ||| ||||| || | || |||| | ||| | || | |
Sbjct 36571 GGGAATTCCTTCCTTGTCCTGAATCTT-GGCCTTAACGTTCTCGATGCTATCACTAGCCT 36629
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||||| || || || || || || | |||||| |||||||| |||||
Sbjct 36630 CGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/141 (75%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || || | ||||| ||||| || ||||| ||||| ||||||||
Sbjct 36907 CATACCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATC 36966
Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
|| ||||| | | || ||||||||||| || || |||||||| | ||||||||||
Sbjct 36967 GGACAGAGTT--CTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCT 37024
Query 44225 GAAGGCACACCTTCCTTTTCC 44245
| ||| | |||||||| |||
Sbjct 37025 GGAGGAATTCCTTCCTTGTCC 37045
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/141 (74%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || || | ||||| ||||| || ||||| || || ||||||||
Sbjct 42223 CATACCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATC 42282
Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
|| ||||| | | || ||||||||||| || ||||||||||| | ||||||||||
Sbjct 42283 GGACAGAGTT--CTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCT 42340
Query 44225 GAAGGCACACCTTCCTTTTCC 44245
| || | |||||||| |||
Sbjct 42341 GGGGGAATTCCTTCCTTGTCC 42361
>seq4668
Length=1644770
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/119 (76%), Gaps = 4/119 (3%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCGT 44186
|||| |||||| ||| ||||| || ||||||||||||| ||||| | | || |
Sbjct 1192719 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTT--CTTCCATCCT 1192776
Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|||||||||| || || |||||||| | ||||||||||| ||| | || ||||| |||
Sbjct 1192777 CCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATCC 1192835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359960131444683
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |