Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6057 122 6e-23 seq4668 84.2 2e-11 >seq6057 Length=130802 Score = 122 bits (134), Expect = 6e-23 Identities = 170/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || || | || |||||||| || ||||| || || |||||||| Sbjct 36679 CATACCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATC 36738 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| | | || ||||||||||| || || |||||||| | |||||||||| Sbjct 36739 GGACAGAGTT--CTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCT 36796 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | |||||||| ||| ||||| || | || |||| | ||| |||| | Sbjct 36797 GGGGGAATTCCTTCCTTGTCCTGGATCTT-GGCCTTAACGTTCTCAATGCTGTCACTAGC 36855 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||| || || |||||||| || | |||||| |||||||| ||||| Sbjct 36856 CTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909 Score = 100 bits (110), Expect = 2e-16 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || || || || | ||||| ||||| || ||||| || || |||||||||| Sbjct 36453 TTCCTCCCCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGG 36512 Query 44169 C--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| | | || ||||| ||||| || || |||||||| | ||||||||||| Sbjct 36513 ACAGAGTT--CTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGG 36570 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| || | || |||| | ||| | || | | Sbjct 36571 GGGAATTCCTTCCTTGTCCTGAATCTT-GGCCTTAACGTTCTCGATGCTATCACTAGCCT 36629 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || || || || || | |||||| |||||||| ||||| Sbjct 36630 CGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/141 (75%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || || | ||||| ||||| || ||||| ||||| |||||||| Sbjct 36907 CATACCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATC 36966 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| | | || ||||||||||| || || |||||||| | |||||||||| Sbjct 36967 GGACAGAGTT--CTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCT 37024 Query 44225 GAAGGCACACCTTCCTTTTCC 44245 | ||| | |||||||| ||| Sbjct 37025 GGAGGAATTCCTTCCTTGTCC 37045 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || || | ||||| ||||| || ||||| || || |||||||| Sbjct 42223 CATACCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATC 42282 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| | | || ||||||||||| || ||||||||||| | |||||||||| Sbjct 42283 GGACAGAGTT--CTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCT 42340 Query 44225 GAAGGCACACCTTCCTTTTCC 44245 | || | |||||||| ||| Sbjct 42341 GGGGGAATTCCTTCCTTGTCC 42361 >seq4668 Length=1644770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/119 (76%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCGT 44186 |||| |||||| ||| ||||| || ||||||||||||| ||||| | | || | Sbjct 1192719 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTT--CTTCCATCCT 1192776 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||||||||| || || |||||||| | ||||||||||| ||| | || ||||| ||| Sbjct 1192777 CCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATCC 1192835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359960131444683