Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6057 149 2e-30 seq4668 96.9 8e-15 >seq6057 Length=130802 Score = 149 bits (164), Expect = 2e-30 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA-GA 177982 || || ||||| || || | || || ||||| |||||||| ||||| || ||| || Sbjct 36678 CAGATCTTCGTCAAGACCTTAACCGGTAAAACCATCACCCTGGAGGTCGAG-GCTAGTGA 36620 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 | |||||||||||| || |||||||||||||| |||||||| || || || ||||| Sbjct 36619 TAGCATCGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCAGCA 36560 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || | |||||||| ||||| || || || |||||||| ||||| ||||||| || | Sbjct 36559 GAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTACAATAT 36500 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || |||||||| || ||||| ||| | || ||||| Sbjct 36499 TCAGAAGGAATCAACTCTTCATCTGGTTCTCAGGCTCAG 36461 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 ||||||||||||||||||| || || || ||||| || | |||||||| ||||| |||| Sbjct 37637 TTCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 37578 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | || |||||||| ||||| |||| || || | || || |||||||| || ||||| | Sbjct 37577 TGGAGGATGGAAGAACTCTGTCCGACTACAATATTCAGAAGGAATCAACTCTTCATCTGG 37518 Query 178129 TTTTGAGACTCAGA 178142 || | || || ||| Sbjct 37517 TTCTCAGGCTTAGA 37504 >seq4668 Length=1644770 Score = 96.9 bits (106), Expect = 8e-15 Identities = 96/123 (78%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 || |||| || || ||||||||||| || ||||| || | |||||||| ||||| |||| Sbjct 1192839 TTAAGGATAAGGAGGGAATCCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 1192780 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | || |||||||| ||||| ||||||| ||| | || || ||||| || || || |||| Sbjct 1192779 TGGAGGATGGAAGAACTCTATCCGATTACAACATTCAGAAGGAATCCACCCTTCA-CTTG 1192721 Query 178129 TTT 178131 || Sbjct 1192720 GTT 1192718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203624798061406