Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 149 2e-30
seq4668 96.9 8e-15
>seq6057
Length=130802
Score = 149 bits (164), Expect = 2e-30
Identities = 166/219 (76%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA-GA 177982
|| || ||||| || || | || || ||||| |||||||| ||||| || ||| ||
Sbjct 36678 CAGATCTTCGTCAAGACCTTAACCGGTAAAACCATCACCCTGGAGGTCGAG-GCTAGTGA 36620
Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
| |||||||||||| || |||||||||||||| |||||||| || || || |||||
Sbjct 36619 TAGCATCGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCAGCA 36560
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102
|| | |||||||| ||||| || || || |||||||| ||||| ||||||| || |
Sbjct 36559 GAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTACAATAT 36500
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|| || |||||||| || ||||| ||| | || |||||
Sbjct 36499 TCAGAAGGAATCAACTCTTCATCTGGTTCTCAGGCTCAG 36461
Score = 111 bits (122), Expect = 4e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068
||||||||||||||||||| || || || ||||| || | |||||||| ||||| ||||
Sbjct 37637 TTCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 37578
Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
| || |||||||| ||||| |||| || || | || || |||||||| || ||||| |
Sbjct 37577 TGGAGGATGGAAGAACTCTGTCCGACTACAATATTCAGAAGGAATCAACTCTTCATCTGG 37518
Query 178129 TTTTGAGACTCAGA 178142
|| | || || |||
Sbjct 37517 TTCTCAGGCTTAGA 37504
>seq4668
Length=1644770
Score = 96.9 bits (106), Expect = 8e-15
Identities = 96/123 (78%), Gaps = 1/123 (1%)
Strand=Plus/Minus
Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068
|| |||| || || ||||||||||| || ||||| || | |||||||| ||||| ||||
Sbjct 1192839 TTAAGGATAAGGAGGGAATCCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGC 1192780
Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
| || |||||||| ||||| ||||||| ||| | || || ||||| || || || ||||
Sbjct 1192779 TGGAGGATGGAAGAACTCTATCCGATTACAACATTCAGAAGGAATCCACCCTTCA-CTTG 1192721
Query 178129 TTT 178131
||
Sbjct 1192720 GTT 1192718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203624798061406
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |