Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 95.1 1e-14
>seq6057
Length=130802
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||||||| || || ||||||||||| || || ||||| || || | | || ||
Sbjct 36473 ACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCC 36532
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|| ||||| || ||||| |||| | ||| || || | ||||| | ||||||||| ||
Sbjct 36533 AGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCC-TG 36591
Query 41774 ATTTTTTGCTTCAACG---ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830
| | || || | |||| ||| | | || || | ||| ||||||| || || |||
Sbjct 36592 AATCTTGGCCTTAACGTTCTCGATGC--TATCACTAGCCTCGACCTCCAGGGTGATGGTT 36649
Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || | ||||| ||||| ||||||||
Sbjct 36650 TTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
||||||||||| || || ||||| || || | | || || |||||||| || |||||
Sbjct 36719 TCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAG 36778
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791
|||| | ||| || || | ||||| | ||||||||| || | || || | ||||
Sbjct 36779 ATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCC-TGGATCTTGGCCTTAACGTT 36837
Query 41792 GACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | |||| || | ||| ||||||| || || || || || |||| ||||| ||
Sbjct 36838 CTCAATGCTGTCACTAGCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGAC 36897
Query 41851 GAAAATCTGCAT 41862
||| ||||||||
Sbjct 36898 GAAGATCTGCAT 36909
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462264132058800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |