Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6057 95.1 1e-14 >seq6057 Length=130802 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||||| || || ||||||||||| || || ||||| || || | | || || Sbjct 36473 ACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCC 36532 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || ||||| || ||||| |||| | ||| || || | ||||| | ||||||||| || Sbjct 36533 AGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCC-TG 36591 Query 41774 ATTTTTTGCTTCAACG---ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 | | || || | |||| ||| | | || || | ||| ||||||| || || ||| Sbjct 36592 AATCTTGGCCTTAACGTTCTCGATGC--TATCACTAGCCTCGACCTCCAGGGTGATGGTT 36649 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || | ||||| ||||| |||||||| Sbjct 36650 TTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||||||||| || || ||||| || || | | || || |||||||| || ||||| Sbjct 36719 TCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAG 36778 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| | ||| || || | ||||| | ||||||||| || | || || | |||| Sbjct 36779 ATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCC-TGGATCTTGGCCTTAACGTT 36837 Query 41792 GACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||| || | ||| ||||||| || || || || || |||| ||||| || Sbjct 36838 CTCAATGCTGTCACTAGCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGAC 36897 Query 41851 GAAAATCTGCAT 41862 ||| |||||||| Sbjct 36898 GAAGATCTGCAT 36909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462264132058800