Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6040 105 1e-17 seq31628 93.3 9e-14 >seq6040 Length=129903 Score = 105 bits (116), Expect = 1e-17 Identities = 448/697 (64%), Gaps = 38/697 (5%) Strand=Plus/Plus Query 292178 TTAGCCAGCAGTTGCTTCGTATCCTTTGGAAAGCAATAAGCTCCATAACCGAACGAAGGG 292237 || |||| ||||||||| || || || || | || || | || || ||||||||||| Sbjct 121682 TTCGCCAACAGTTGCTTAGTGTCTTTAGGCAGACAGTAGCCACCGTAGCCGAACGAAGGA 121741 Query 292238 TTTGAGTACCCCTGACCAATGCGAGGCTCCAGAGTCACACCATCAATGATTTCTTTCGCA 292297 || ||| | ||||||||| || || || | ||| || |||||||| Sbjct 121742 TTATTGTAGTGCGAACCAATGCGCGGATCGAGGCCGATACCTTCGATGATTTCACGGCTG 121801 Query 292298 TTCATACCGTGAGACATTGCGAATGTATCTAGTTCGTTGAAGTATGCAACTCGCATTGCA 292357 || | ||||| | ||| | | || || ||||| ||||| |||| |||| ||| Sbjct 121802 TTAAGGCCGTGGTGCTCGGCGTAGCTGTCCAGCTCGTTAAAGTAGGCAATACGCAACGCA 121861 Query 292358 AGATACGTGTTAGAGAATAGTTTGACGGCCTCGGCTTCGCGAGTTCCCATCGTCAGGACA 292417 ||||| ||||||| ||| || |||| |||||| |||||| | ||||| | ||| Sbjct 121862 AGATAGGTGTTAGCGAAAAGCTTGATGGCCTCAGCTTCGGTAT----CATCGGTAA-ACA 121916 Query 292418 GGGGCAAGCGGAGTTTT-------AGAACCTTCAACGAGAAGGTTTGCGAACTTAAGCGC 292470 | | ||| ||||| || |||||||| || || | || |||| | || Sbjct 121917 GAACC--GCGATGTTTTCCTTGATAGCTCCTTCAACCAGCAGATCGGCAAACTGGCGAGC 121974 Query 292471 AATGGGGGAATCAT-CT-CCTACGATGATACGGGATGGGTAGAGATTATCATACAAGGCT 292528 | | | | || || || | || || || || | || || || || | || Sbjct 121975 CTTTTC--ACTTTTGCTGCCCACTACAATGCGTGAAGGATGCAGGTTGTCGTAAAGCGCA 122032 Query 292529 CTACCTTCACGCAGAAATTCTGGGGAGAAAATGATATTTTGGTAGTCGAA--TTGCT--C 292584 | ||||||||||| || ||||| ||||| || || || | | | | | || || | Sbjct 122033 CGCCCTTCACGCAGGAACTCTGGCGAGAAGATAATGTTGTCGACGCCCAGCTTTTCTTTC 122092 Query 292585 ACGAACCTTATCAACAAATCCAATGGGGATGGTAGATTTAATCACGATAGTTGGATGGGT 292644 | | | | || ||| | |||||||| ||||| || ||||| || | Sbjct 122093 AGGCTGCGGGTGAA----TCCGACCGGGATGGTCGATTTGATAACGATCGTAGC------ 122142 Query 292645 CTGTGTATTT-TTG--ATCACGTCCCCAATGACGTTTTCCACAGATTTCGTGTTAAAATA 292701 | | | ||| ||| | || || | ||| || || || | | ||||| || || Sbjct 122143 CCGAGGATTGATTGCCAGGACATCGCTAATCACCAGCTCAACGCTTCTGGTGTTGAAGTA 122202 Query 292702 CCTAGTAACCACGTCATAGTCAGTCGGGGTTGCGATGATGACAAATTCGGCGTTTTCGTA 292761 ||| ||| || |||||||| || ||||| | || ||||| || |||||||| || Sbjct 122203 GTTAGATACCGGATCGTAGTCAGTAGGCGTTGCCACAATAACAAAATCAGCGTTTTCATA 122262 Query 292762 TGCAAGAACCTTGTCAGTCGTCGCGGTCAGGTTCAGGTCTTTCGTTTCGAGAAACTCTTC 292821 || || |||||| || || || || | ||| || || ||||| ||||||||||||| Sbjct 122263 AGCCTGATGCTTGTCGGTGGTTGCAGTAAAGTTGAGATCCTTCGTCGCGAGAAACTCTTC 122322 Query 292822 GATTTCCTTGTCCTCGATTGG---ACTCTTCTTGTTC 292855 ||||||| || ||||||| | |||| |||||| Sbjct 122323 AGTTTCCTTATCAACGATTGGAGAAATCTTGTTGTTC 122359 >seq31628 Length=8758 Score = 93.3 bits (102), Expect = 9e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 281559 GGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACC 281618 ||||||| | || ||| || ||||||||||| || ||||||||| | |||||| ||| Sbjct 5246 GGATTATGATTGTAAATTTTTGTAGACCAACCTGTGCCAATACCATCAGCACCATTCACC 5305 Query 281619 AAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATC 281674 || | |||| ||||| || ||||| || | |||||||||||| | |||||| || Sbjct 5306 AATACCATCGGTATAATCGGCACATACCACTGTGGTTCAATTTTCTGACCATCGTC 5361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1055939458114980