Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq14905 145 8e-30 seq2788 131 2e-25 seq2551 96.9 4e-15 >seq14905 Length=119551 Score = 145 bits (160), Expect = 8e-30 Identities = 142/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 63557 TTACAAACTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 63616 ||||| || | ||| || ||||||| ||| ||||| ||||||||||||| |||| || Sbjct 42459 TTACAGGCTCTGAGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGA 42400 Query 63617 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 63676 |||||| || || || || || || |||||||| |||| ||| ||||| || || ||||| Sbjct 42399 GTTAAAACGCACGGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATG 42340 Query 63677 CTTAACTGCATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 63736 || | |||||||| || || ||| |||||| ||||||||||| || || || || || Sbjct 42339 TTTTATCGCATCTTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCC 42280 Query 63737 TTC 63739 ||| Sbjct 42279 TTC 42277 >seq2788 Length=136445 Score = 131 bits (144), Expect = 2e-25 Identities = 324/492 (66%), Gaps = 0/492 (0%) Strand=Plus/Plus Query 141616 CGGACTGAACAAAGTAATGTAATCGTTTTTTCCAAAACGTTCCATCATCAAATCATTCAG 141675 ||| ||||||| ||| |||| || ||| | | ||| | ||||| | || | Sbjct 19219 CGGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGAT 19278 Query 141676 TTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 141735 || || || || ||||| ||||||| |||||| |||| || || ||| ||||||| Sbjct 19279 CTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAG 19338 Query 141736 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 141795 ||| || || |||||||||||| ||||| || || || | || ||||| ||||| Sbjct 19339 AACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCC 19398 Query 141796 ACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAAT 141855 || | || ||||| || || |||||||| || ||||| || || || | || || || Sbjct 19399 GCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGAT 19458 Query 141856 AACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACC 141915 | || |||||| | ||||||| || |||| ||| ||||| || || Sbjct 19459 ACAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCC 19518 Query 141916 AACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCAGAAGCCTT 141975 | |||| || || || || ||||| | || | |||| || || | || | | Sbjct 19519 AGCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGATGGCGCTGGAGGTCGC 19578 Query 141976 ATTGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACATGAACTAAACTGTCGAGT 142035 ||||| || | || || || ||| || | || || || || ||||| ||||| Sbjct 19579 GTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGT 19638 Query 142036 CGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTTGATACTGC 142095 ||| || || || | |||||| || || |||| ||||||| ||||| || || Sbjct 19639 CGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGAAACCGC 19698 Query 142096 TTCATAAAAACG 142107 ||||| ||||| Sbjct 19699 ATCATAGAAACG 19710 >seq2551 Length=53185 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 63557 TTACAAACTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 63616 ||||| ||| |||||||||||| | || ||||| |||||||||| || || || Sbjct 37116 TTACAGCGTTTTAGTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGA 37057 Query 63617 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 63676 ||| ||||| || ||||| || || || ||||| |||||||| || |||| || |||| Sbjct 37056 GTTGAAGCGTACCGCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATT 36997 Query 63677 CTTAACTGCATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 63736 | | || || ||| | || | || |||||||||||||| || ||||| || Sbjct 36996 TTCCATGGCCTCCAGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCC 36937 Query 63737 TTCAAT 63742 ||| || Sbjct 36936 TTCGAT 36931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539422411012080