Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq1602 104 7e-18 seq70006 102 3e-17 seq81489 89.7 2e-13 >seq1602 Length=1372 Score = 104 bits (114), Expect = 7e-18 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 39010 AATAAAAACATCTCAGAATGGTGCATCCCTCAAAACGAGGGAAANNNNNNNNNNNNNNNN 39069 ||||||||| ||||||||||| || |||||||||||||||| | Sbjct 754 AATAAAAACGTCTCAGAATGGGACACCCCTCAAAACGAGGGAGAATCCCTCAAATTAGGG 813 Query 39070 NNNNNAACATCCCTCAAATTGGGGGATTGCTATCCCTCAAAACAGGGGGACACAAAAGAC 39129 | |||||||||||||||| || | |||||||||||||||||||||| | |||| Sbjct 814 GATAAAGAATCCCTCAAATTGGGGTATCGGCATCCCTCAAAACAGGGGGACACCATAGAC 873 Query 39130 ACTATTACAAAAGAAAAAA 39148 | |||||| ||||| |||| Sbjct 874 ATTATTACCAAAGACAAAA 892 >seq70006 Length=3190 Score = 102 bits (112), Expect = 3e-17 Identities = 84/101 (83%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 21886 CGGACACACCATCACCGTTAACGCTGCGGGTAACGCGGAAAACACCGTCAAAAACATTGC 21945 ||| |||||||| ||||||||| | | |||||| ||||| || || || |||||||| Sbjct 625 CGGCCACACCATTACCGTTAACTCGTCAGGTAACTCGGAAGTGACAGTTAAGAACATTGC 566 Query 21946 ATTTAACTATATTGTGAGGCTTGCATAATGGCATTCAGAAT 21986 ||||||||| |||||||||||||| ||||| ||||| |||| Sbjct 565 ATTTAACTACATTGTGAGGCTTGCCTAATGTCATTC-GAAT 526 >seq81489 Length=1574 Score = 89.7 bits (98), Expect = 2e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 31591 ACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCC 31650 |||||| | | |||||||||| ||| | | || | |||| ||||||||||||||| Sbjct 619 ACCACCCAACAGGAACTTCATAAAAACTGCGCTTGTGTAAGGGCTTTTCAGTTCAAGGCC 560 Query 31651 GTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTCGCGATA 31710 | || |||||||| | ||||| || ||||||||| || | ||||| || Sbjct 559 GCGTCCATCACTGCACATGCCATCAGGTGAGCAGGCGCACCGAAGCGAGTCGTCCTTGTA 500 Query 31711 GATGATCGGGGATTCAGTAACATTCACGCCGGAAGTGAATTCAAACAGGGTTC-TGGCGT 31769 || ||||| || | ||| || ||| | | |||||||||||||| |||| || | Sbjct 499 AATTATCGGCACATCCGAAACTTTAACGTCCGTTGTGAATTCAAACAGCGTTCGTGCTGA 440 Query 31770 CGTTCTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGTTAACTTC 31815 | | || | || ||| ||||| ||||| | || |||||||| || Sbjct 439 TGCT-TCATGCTCTTTCCCCCATGCCAGGGGCTTGGCGTTAACCTC 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154828728436928