Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq18834 104 2e-18 >seq18834 Length=2545 Score = 104 bits (114), Expect = 2e-18 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5449 TTTGCCGCTGCCGCCGGGACCGGTCACCTCCAGAAAGAGCTGCCAGTCGTAGCGGTTTGC 5508 ||||||||||||||| || || || | || || || ||||||||||| ||||||||||| Sbjct 1 TTTGCCGCTGCCGCCTGGGCCCGTGATTTCAAGGAACAGCTGCCAGTCATAGCGGTTTGC 60 Query 5509 CAGCACCATAAACAGTGCAGCCAGAAT 5535 ||||||||||||||| || |||||||| Sbjct 61 CAGCACCATAAACAGGGCCGCCAGAAT 87 Score = 89.7 bits (98), Expect = 4e-14 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 8260 CGGCGACGGTGCGAAGCATACAGATACGGGGA-TGACGGTCTGCGCGACGGACAGCCGCA 8318 |||| |||||||| ||| | || | | ||| | |||| || || || || || || ||| Sbjct 2373 CGGCAACGGTGCGCAGCCTGCAAACAGGGGCACTGACT-TCGGCACGGCGAACGGCGGCA 2431 Query 8319 AACACAAAGACAAATTCAGGGTGTGAGGGGGTAAGGGTTGTAGCCATGATGGCAGCCTCC 8378 |||| |||| ||||| |||| | | ||||| ||||| ||||||||||||||||||||| Sbjct 2432 AACAAAAAGGTAAATTGCGGGTATAACGGGGTGAGGGTAGTAGCCATGATGGCAGCCTCC 2491 Query 8379 TGTGAATA 8386 ||| || Sbjct 2492 ATTGAGTA 2499 Score = 80.6 bits (88), Expect = 2e-11 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 6758 TTTTCAACCAGTTTCAGGCCGTCACCGGCACCACACTGATTGCAGTACCAGGTGCCGCGC 6817 ||||| || || ||| || || ||||| || ||||| |||||| |||||||||||| Sbjct 1432 TTTTCGACTAGCGCCAGCCCATCGCCGGCCCCGCACTGGTTGCAGAGCCAGGTGCCGCGT 1491 Query 6818 CCCTCCCTGTCATCAAAACGGAAGCGGTCACTCCCGCCACAGACCGGACAGG 6869 || || | ||||| ||||||||||| | ||||| || |||||||||| Sbjct 1492 CCGGCCTGATTGTCAAAGCGGAAGCGGTCTTTACCGCCGCAAACCGGACAGG 1543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37023594458272