Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq43985 257 2e-63 >seq43985 Length=4878 Score = 257 bits (284), Expect = 2e-63 Identities = 533/783 (68%), Gaps = 23/783 (3%) Strand=Plus/Minus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 || ||| |||| || || || | || | || ||||| | |||||| || || |||||| Sbjct 2136 GAGCCTTCATAAGTTTCATAAGTACCATATTTTTCAGCCAATTCACAGCTAGCTTCTAAT 2077 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATC 53499 || || || || || ||||| || || | | ||||| || | || | | ||| || Sbjct 2076 GCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAGCGCA-GCCTGCTCGCTCTC 2018 Query 53500 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559 |||| ||| | || || || |||||||| || ||||| | ||||| || ||||| Sbjct 2017 GTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATGCCAATAGG 1958 Query 53560 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 53619 | |||||| |||||| | | || || || | ||||||| ||| || || || || Sbjct 1957 GCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTATGTCGATGAT 1898 Query 53620 TTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCA---GTTTGAGAAAATC 53673 |||||| || || | | ||| | | | | ||| ||||||| | || |||||| Sbjct 1897 TTTATTTAGATTACGTGTTACAGTCATTGTAACC---TCCTTCAAACGCTT---AAAATC 1844 Query 53674 AAA---TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGC 53730 | || | | | | |||||||| || | |||||| ||||| | ||||||||| || Sbjct 1843 GTACGTTTTTTCTGGTGTAACAAACATATTGAGTGCAATCGATGCTAAATTACAAACAGC 1784 Query 53731 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 53790 || |||| | | | ||| | | ||| || || || | ||||||||| || || || Sbjct 1783 CACTTCATCTGGTGCTGAATACTCAACTATTTCTGTACATAAATTACTACATTTAATAGT 1724 Query 53791 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGT 53850 || | ||||||||||||||||||| | ||||| |||||||| || || || |||| || Sbjct 1723 GCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGTACAGCATATATGGTGT 1664 Query 53851 ACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGAC-ACGAGCCTTTATTATAG 53909 || || || | || ||||| ||||| || ||| | ||| | || |||| | | Sbjct 1663 GCCTGTCTCTACTTGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTTACTTT-- 1607 Query 53910 ATTTGTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCA 53967 || || | | | |||| || ||| ||||| ||| |||||| || || ||||| Sbjct 1606 CTTATTAGCGCGTCCGTCTTGCTCATATTTAGTATATAATTTTTCAAATTCATCGCCCCA 1547 Query 53968 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 54027 || | | ||| || ||||| | | |||||||| | |||||| ||| | | | | | Sbjct 1546 TACCTCATGCAAGCCGGGACACTTGTGTGGACACATAAGCGACCAATCTTCATTAGCTTC 1487 Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 || ||||||||||| ||||| |||||||| | || ||||| |||||| | |||||| Sbjct 1486 AACACGTTTCATAAAAAGATCTGGAATCCATAATGCATAAAATAAATCTCTAGCTCTATG 1427 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || | || ||||| || || | ||| | || | | ||||| | |||||| || Sbjct 1426 CTCTTCTGTGCCAGTATTTTTCTTTAAATCCAAAAATTCAAATATATCTGCATGCCATGG 1367 Query 54148 TTC 54150 ||| Sbjct 1366 TTC 1364 Score = 138 bits (152), Expect = 1e-27 Identities = 260/380 (68%), Gaps = 3/380 (1%) Strand=Plus/Minus Query 52883 TAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 52942 |||||||| ||| ||| || ||| |||| | || || |||| ||| ||||| | ||| Sbjct 2681 TAAAAATGTATAGATGTAAGCTTGCCATAATTTGGTTCAGCTACATGAATATTAAACGAT 2622 Query 52943 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA 53002 ||||||||||||||||| || || | || || ||||| || || | ||||| | Sbjct 2621 TGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTCACCGAT 2562 Query 53003 ATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGA 53059 || ||||||| ||||| |||| | | | || | | | | | || || || | || Sbjct 2561 ATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGATTCAATACCTTGT 2502 Query 53060 ATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG 53119 || || |||| | ||||| || || || || |||| ||| || || Sbjct 2501 ATTGAACCACGGCTTGTTATAATTTTAGATTTCATATCTTCATCCCACAAACCCAATTCA 2442 Query 53120 GTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGA 53179 || | | | | | | ||| ||||||| ||||||||||| || || | ||| | ||| Sbjct 2441 GTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACGCGTCGA 2382 Query 53180 GTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTT 53239 | |||||||| || || ||||| | || |||||||| |||| |||||| |||||| Sbjct 2381 TTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGTGCAGTT 2322 Query 53240 GATGCAGTCGGCATAGGTGC 53259 |||||||| |||||||| || Sbjct 2321 GATGCAGTGGGCATAGGGGC 2302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592689667330080